Factsheet for PGSC0003DMT400028257

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400028257
PGSC0003DMT400051857
PGSC0003DMT400067767
PGSC0003DMT400079711

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	PGSC0003DMT400028257	AT2G31270.1	22773747
AT2G31270.1	PGSC0003DMT400051857	AT5G13060.1	18818695
AT2G31270.1	PGSC0003DMT400079711	AT5G22110.1	22773747
AT3G54710.1	PGSC0003DMT400067767	AT2G27470.1	22773747
AT3G54710.1	PGSC0003DMT400028257	AT3G54710.1	22773747
AT3G54710.1	PGSC0003DMT400051857	AT5G13060.1	18818695
AT3G54710.1	PGSC0003DMT400079711	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008510.2.1	Tomato	nucleus, plastid	85.08	85.08
VIT_07s0005g03090.t01	Wine grape	nucleus	46.83	47.31
CDX84793	Canola	nucleus, plastid	36.71	38.84
Bra022834.1-P	Field mustard	nucleus, plastid	36.54	38.66
GSMUA_Achr10P...	Banana	nucleus	36.02	38.53
CDY23948	Canola	nucleus, plastid	36.02	37.97
HORVU2Hr1G003370.11	Barley	cytosol	30.19	37.61
CDY24744	Canola	nucleus	37.22	37.03
CDY67450	Canola	cytosol	16.81	36.57
CDY10780	Canola	nucleus	36.71	36.46
KRH32170	Soybean	plastid	37.22	36.41
Bra018272.1-P	Field mustard	nucleus	36.54	36.29
CDY15409	Canola	nucleus, plastid	30.7	36.09
AT2G31270.1	Thale cress	nucleus, plastid	35.16	35.9
TraesCS2D01G023000.1	Wheat	cytosol, plastid	32.76	35.37
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	26.24	35.01
Bra014797.1-P	Field mustard	cytosol, plastid	27.62	35.0
CDX76134	Canola	cytosol, plastid	27.62	34.48
CDY13226	Canola	cytosol, plastid	28.13	34.38
CDX76137	Canola	cytosol, plastid	27.79	34.32
KRH19542	Soybean	nucleus	36.19	34.09
Zm00001d045354_P002	Maize	nucleus	33.45	34.03
TraesCS2A01G022200.1	Wheat	plastid	33.62	33.91
EER89201	Sorghum	nucleus	33.28	33.74
AT3G54710.1	Thale cress	cytosol, plastid	27.79	33.33
TraesCS2B01G030600.1	Wheat	plastid	32.76	32.93
Bra014795.1-P	Field mustard	cytosol	19.55	32.39
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	32.08	31.8
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	18.52	28.05
PGSC0003DMT400039343	Potato	nucleus	21.61	24.47
HORVU4Hr1G047140.6	Barley	plastid	9.09	24.31
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	36.02	21.99

Protein Annotations

EnsemblPlants:PGSC0003DMT400028257	EnsemblPlantsGene:PGSC0003DMG400010892	EntrezGene:102583611	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
InterPro:WH_DNA-bd_sf	PANTHER:PTHR28637	PANTHER:PTHR28637:SF5	PFAM:PF08839	PFAM:PF16679	PGSC:PGSC0003DMG400010892
RefSeq:XP_006365907.1	SEG:seg	SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI0002958A21	UniProt:M1AQW4
MapMan:13.2.1.3	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010892]

Coordinates

chr6:-:1465738..1469058

Molecular Weight (calculated)

64795.3 Da

IEP (calculated)

10.059

GRAVY (calculated)

-0.572

Length

583 amino acids

Sequence
(BLAST)

001: MESTDSSSSS LLNTFKSKKK LQIGSDPDTS GAPSLDPWSS KTPEKTIVPP RRTRNRNAAF SLKDIRQAAQ KLRKPDPTRP NSQTDTSLSS VKTQMEEASA
101: AKPKKPVNPV KLPEKYKLLE EFFGGLVSSI RLLQLKGSSA TFTNISAKVE CLTDRRFTYN HLAQLKFLLP EAIEIKKMLV FDERTTCMKP DLHIALNANG
201: VAGDKKLKSS RGTEQLRTVF SSRILDFFKS HPEGDDIPEE ELPGAFGASK QEHLTNSSSP VGAQLKEETP IGSVQKPPVA VSHLSQSFRR SFSHRASIGI
301: AENVKQQTTV SQTSIPRVSE PQITNCPTNT SKLLLTQTRT TRFSTQGVHS ATLPPSPLPA TPSKNTKSED GSCLLSAEST PEKLASTPAK LMSSTPLLQP
401: SKRCYMTPDG ESTESPRKLV RRPPPSRSLT FNTPVKSSKV TEETSRRRES STDDEIFDIL PENLLQSIRA KEQEALEELD PAISQAKWRK KMISVLPKFF
501: DMIYFLFHSI NRYVITKEEL THKVISSHLA IADKREFEEL LRLLQEIAPE WIHEKLSSSG DLLLCVSKVS NADSIRTRIA EAK

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.