CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95533
KRG99612
KRH09498
KRH18030
KRH19542
KRH25189
KRH25243
KRH30420
KRH31260
KRH32170
KRH38973
KRH67208

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	KRG99612	AT1G08260.1	22773747
AT2G31270.1	KRH18030	AT1G08260.1	22773747
AT2G31270.1	KRH25189	AT1G08260.1	22773747
AT2G31270.1	KRH31260	AT1G08260.1	22773747
AT2G31270.1	KRH19542	AT2G31270.1	22773747
AT2G31270.1	KRH32170	AT2G31270.1	22773747
AT2G31270.1	KRG95533	AT5G13060.1	18818695
AT2G31270.1	KRH67208	AT5G13060.1	18818695
AT2G31270.1	KRH09498	AT5G22110.1	22773747
AT2G31270.1	KRH38973	AT5G22110.1	22773747
AT3G54710.1	KRG99612	AT1G08260.1	22773747
AT3G54710.1	KRH18030	AT1G08260.1	22773747
AT3G54710.1	KRH25189	AT1G08260.1	22773747
AT3G54710.1	KRH31260	AT1G08260.1	22773747
AT3G54710.1	KRH25243	AT2G27470.1	22773747
AT3G54710.1	KRH30420	AT2G27470.1	22773747
AT3G54710.1	KRH19542	AT3G54710.1	22773747
AT3G54710.1	KRH32170	AT3G54710.1	22773747
AT3G54710.1	KRG95533	AT5G13060.1	18818695
AT3G54710.1	KRH67208	AT5G13060.1	18818695
AT3G54710.1	KRH09498	AT5G22110.1	22773747
AT3G54710.1	KRH38973	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32170	Soybean	plastid	83.52	86.75
VIT_07s0005g03090.t01	Wine grape	nucleus	38.13	40.9
CDY67450	Canola	cytosol	16.64	38.43
CDY24744	Canola	nucleus	35.54	37.54
Bra018272.1-P	Field mustard	nucleus	35.38	37.31
CDY10780	Canola	nucleus	35.38	37.31
Solyc06g008510.2.1	Tomato	nucleus, plastid	35.06	37.22
CDX84793	Canola	nucleus, plastid	32.47	36.48
Bra022834.1-P	Field mustard	nucleus, plastid	32.31	36.3
PGSC0003DMT400028257	Potato	nucleus, plastid	34.09	36.19
AT2G31270.1	Thale cress	nucleus, plastid	32.79	35.55
CDY23948	Canola	nucleus, plastid	31.66	35.44
CDY15409	Canola	nucleus, plastid	27.79	34.68
Bra014795.1-P	Field mustard	cytosol	19.71	34.66
Solyc01g006140.2.1	Tomato	nucleus	31.83	34.44
CDX76137	Canola	cytosol, plastid	26.01	34.11
CDY13226	Canola	cytosol, plastid	26.17	33.96
Bra014797.1-P	Field mustard	cytosol, plastid	25.04	33.7
CDX76134	Canola	cytosol, plastid	25.2	33.4
GSMUA_Achr10P...	Banana	nucleus	29.08	33.03
EER89201	Sorghum	nucleus	30.53	32.87
Zm00001d045354_P002	Maize	nucleus	29.89	32.29
HORVU2Hr1G003370.11	Barley	cytosol	24.39	32.27
AT3G54710.1	Thale cress	cytosol, plastid	24.72	31.48
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	21.97	31.12
TraesCS2D01G023000.1	Wheat	cytosol, plastid	26.01	29.81
KRH30328	Soybean	mitochondrion	5.49	29.06
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	27.46	28.91
TraesCS2B01G030600.1	Wheat	plastid	26.49	28.28
TraesCS2A01G022200.1	Wheat	plastid	26.01	27.85
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	17.29	27.79
HORVU4Hr1G047140.6	Barley	plastid	8.89	25.23
KRH52336	Soybean	cytosol	8.4	21.85
KRH38848	Soybean	nucleus	17.93	20.59
KRH09362	Soybean	mitochondrion	16.16	20.49
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	28.76	18.64

Protein Annotations

Gene3D:1.10.10.1420	EntrezGene:100808801	MapMan:13.2.1.3	EMBL:ACUP02008183	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C
EnsemblPlantsGene:GLYMA_13G122100	GO:GO:0000076	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0051276	UniProt:K7LZ99
EnsemblPlants:KRH19542	ProteinID:KRH19542	ProteinID:KRH19542.1	PFAM:PF08839	PFAM:PF16679	PANTHER:PTHR28637
PANTHER:PTHR28637:SF6	SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI00029594FC	InterPro:WH_DNA-bd_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:23502049..23505750

Molecular Weight (calculated)

69386.4 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.664

Length

619 amino acids

Sequence
(BLAST)

001: MNKSSDAAAS PYCRGRSKKP NLRSSKSQPP SHVEFSSKTP EKPPQRIRNR GVALSVADIR KAACKRLQDQ KQCTETTSSS LSSSSSLSKS VRRQISLGPS
101: SPSKPMATED ESSNLPEKYE ILDEFFNRLD TLVSLHRLKR WTPTFTSISS RIESLTDRRF THSHLAQLKF ILRKAIVLRK HLVLDERTSC MKPDIHISLD
201: PDAVEADAAK LPPQGGRVSL KKVFRARLKE FWESHPEGDE IPEGTLPEPF NRQKKDSVVD MLETPLPTKL PPCMRYSDIV NNADLDEKLY VPVNATVEFP
301: NEHLAAPSHM APSFRADDVQ QNPLLDSLQP LAFPVSESSQ KENPPLVDTE SHLKTSPAKF SSEASSSESC LTICASLESS SPHPATPSKT IEYTEKKDGS
401: LKSIDAMSTP TSRTNKYTEN KDGSLESIDA TSTPAKLVST PIRLMSATPA LRSPKRRYMS PDDHSISSLN KLARHPSRSR SLKFDTPVKN KDDISDTLQE
501: EFIQSIREKE RLAMEERDPA ITQAKKRKKN IASIPKLFDM IRGLLRQRNC ITKAELVSKI ISTRCDIADR SEVEEQLNLL QELAPEWIYE KHVYSGDLLL
601: FINKMLSPET VRASLEEAT

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.