CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18030	Soybean	mitochondrion, plastid	45.23	95.52
KRH31260	Soybean	cytosol, nucleus, plastid	71.02	9.12
KRH25189	Soybean	nucleus	69.61	8.92
Bra018641.1-P	Field mustard	nucleus	65.37	8.69
CDX95079	Canola	nucleus	65.72	8.69
GSMUA_Achr9P17910_001	Banana	nucleus	60.42	8.68
AT2G27120.2	Thale cress	nucleus	65.02	8.59
OQU85005	Sorghum	nucleus	63.6	8.58
CDX93579	Canola	nucleus	65.37	8.53
AT1G08260.1	Thale cress	nucleus	65.02	8.51
TraesCS1B01G156600.1	Wheat	cytosol	61.13	8.45
TraesCS1D01G139000.1	Wheat	cytosol	60.78	8.4
TraesCS1A01G130700.1	Wheat	nucleus	63.6	8.13
HORVU1Hr1G036500.57	Barley	mitochondrion, nucleus	58.66	7.6
Os02t0511900-00	Rice	nucleus	9.89	4.11
GSMUA_Achr9P17920_001	Banana	nucleus	3.18	3.88
Os02t0511901-00	Rice	nucleus	0.35	0.14

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	MapMan:13.2.3.3.1	Gene3D:3.90.1600.10	EMBL:ACUP02011218	InterPro:Cu-oxidase_2
InterPro:Cupredoxin	InterPro:DNA-dir_DNA_pol_B_multi_dom	InterPro:DNA_pol_palm_dom_sf	EnsemblPlantsGene:GLYMA_18G157400	GO:GO:0000166	GO:GO:0000278
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003887	GO:GO:0004518
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006272	GO:GO:0006281	GO:GO:0006287
GO:GO:0006297	GO:GO:0006950	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008310
GO:GO:0008622	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0016740	GO:GO:0016787
GO:GO:0045004	GO:GO:0055114	GO:GO:0071897	GO:GO:0090305	InterPro:IPR008972	InterPro:IPR023211
UniProt:K7MSJ4	EnsemblPlants:KRG99612	ProteinID:KRG99612	ProteinID:KRG99612.1	PFAM:PF00136	PFAM:PF07731
InterPro:POL2	PANTHER:PTHR10670	SUPFAM:SSF49503	SUPFAM:SSF56672	UniParc:UPI0002953F6F	:

Description

hypothetical protein

Coordinates

chr18:-:35123107..35126732

Molecular Weight (calculated)

32127.4 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.120

Length

283 amino acids

Sequence
(BLAST)

001: MFHVTNVTII ETFILNASTA TIDGLSRYSV NNVSYLIPDI PLKLAYFFSN RTGVYELDAF SKNTSNANAV RGVFVSSALL KGWTEIVLEN NLDIIDTWHL
101: DGYSFFVVGY NVSFRDRRYE YKGLNKVWKG KLSEAKASGN SIKIQEAQDM VVLYDSLQIA HKCILNSFYG YVMRKGARWY SMEMAGVVTY TGANIIQNAR
201: LLVEKIGKPL ELDTDGIWCA LPGSFPENFT FKTRDPKKKF TISYPCVMLN VDVAINNSND QYQTLTDPIR KTYTTRSECS IEF

Best Arabidopsis Sequence Match ( AT2G27120.3 )
(BLAST)

0001: MSGRRCDRRL NVQKVSAADE LETKLGFGLF SQGETRLGWL LTFASSSWED ADTGKTFSCV DLFFVTQDGS SFKTKYKFRP YLYAATKDNM ELEVEAYLRR
0101: RYERQVADIQ IVHKEDLYLK NHLSGLQKKY LKVSFDTVQQ LVEVKRDLLH IVERNLAKFN ALEAYESILS GKREQRPQDC LDSVVDLREY DVPYHVRFAI
0201: DNDVRSGQWY NVSISSTDVI LEKRTDLLQR AEVRVCAFDI ETVKLPLKFP DAEYDQIMMI SYMVDGQGFL ITNRECVGKD IEDLEYTPKP EFEGYFKVTN
0301: VTNEVELLRK WFSHMQELKP GIYVTYNGDF FDWPFIERRA SHHGIKMNEE LGFRCDQNQG ECRAKFVCHL DCFSWVKRDS YLPQGSQGLK AVTKVKLGYD
0401: PLEVNPEDMV RFAMEKPQTM ASYSVSDAVA TYYLYMTYVH PFVFSLATII PMVPDEVLRK GSGTLCEMLL MVEAYKANVV CPNKNQADPE KFYQGKLLES
0501: ETYIGGHVEC LQSGVFRSDI PTSFKLDASA YQQLIDNLGR DLEYAITVEG KMRMDSVSNF DEVKEVIREK LEKLRDDPIR EEGPLIYHLD VAAMYPNIIL
0601: TNRLQPPSIV TDEVCTACDF NGPEKTCLRK LEWVWRGVTF KGNKSEYYHL KKQIESESVD AGANMQSSKP FLDLPKVEQQ SKLKERLKKY CQKAYSRVLD
0701: KPITEVREAG ICMRENPFYV DTVRSFRDRR YEYKTLNKVW KGKLSEAKAS GNLIKIQEAH DMVVVYDSLQ LAHKCILNSF YGYVMRKGAR WYSMEMAGVV
0801: TYTGAKIIQN ARLLIERIGK PLELDTDGIW CALPGSFPEN FTFKTIDMKK FTISYPCVIL NVDVAKNNSN DQYQTLVDPV RKTYNSRSEC SIEFEVDGPY
0901: KAMIIPASKE EGILIKKRYA VFNHDGTIAE LKGFEMKRRG ELKLIKVFQA ELFDKFLHGS TLEECYSAVA AVANRWLDLL EGQGKDIADS ELLDYISESS
1001: TMSKSLADYG QQKSCAVTTA KRLADFLGDT MVKDKGLRCQ YIVAREPEGT PVSERAVPVA IFQTDDPEKK FYLQKWCKIS SYTGIRSIID WMYYKQRLHS
1101: AIQKVITIPA AMQKVANPVL RVRHPYWLEK KVCDKFRQGK IVDMFSSANK DHSTTQDNVV ADIEEFCKEN RPSVKGPKPV ARSFEVDRNH SEGKQQESWD
1201: PEFHDISLQN VDKNVDYQGW LELEKRKWKM TLTNKKKRRF DDLKPCNQID AHKINKKVCK GRVGVGSYFR RPEEALTSSY LQIIQLVQSP QSGQFFAWVV
1301: VEGLMLKIPL TIPRVFYINS KASIAGNFTG KCINKILPHG KPCYNLMEVN IQEDQFIKES KKLAALLADP EIEGIYETKM PLEFSAICQI GCVCKIEDTA
1401: KHRNTQDGWK LGELHRITTT ECRYLENSIP LVYLYHSTST GRAVYVLYCH ASKLMSVVVV NPYGDKELLS SALERQFRDR CQELSPEPFS WDGILFQVEY
1501: VDHPEAATKF LQKALCEYRE ENCGATVAVI ECPDFNTTKE GVKALEDFPC VRIPFNDDDN SYQPVSWQRP AAKIAVLRCA SAIQWLDRRI AQSRYAHVPL
1601: GNFGRDWLTF TVDIFLSRAL RDQQQVLWVS DNGVPDLGDI NNEETFLADE TSLLFPGAYR KVSVELKVHR LAVNALLKSD LVSEMEGGGF LGVNSRGSSL
1701: NDNGSFDENN GCAQAFRVLK QLIKRLLHDA CNSGNIYADS ILQHLSWWLR SPSSKLHDPA LHLMLHKVMQ KVFALLLTDL RRLGAIIIYA DFSKVIIDTG
1801: KFDLSAAKTY CESLLTVMGS RDIFKLILLE PVHYWHSLLF MDQHNYAGIR ATGDEISGNE VTIEPKWSVA RHLPEYIQKD FIIIVATFIF GPWKFALEKK
1901: RGSAESLEAE MVEYLKEQIG TRFISMIVEK IGNIRSHIKD INVSDASWAS GQAPKGDYTF EFIQIITAVL ALDQNVQQDV LVMRKILLKY IKVKECAAEA
2001: EFIDPGPSFI LPNVACSNCG AYRDLDFCRD SALLTEKEWS CADPQCVKIY DKEQIESSII QMVRQRERMY QLQDLVCNRC NQVKAAHLTE QCECSGSFRC
2101: KESGSDFHKR IEIFLDIAKR QKFRLLEECI SWILFATSC

Arabidopsis Description

POL2BDNA polymerase epsilon catalytic subunit [Source:TAIR;Acc:AT2G27120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.