Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18030 | Soybean | mitochondrion, plastid | 5.6 | 89.55 |
| AT1G08260.1 | Thale cress | nucleus | 85.24 | 84.45 |
| Bra018641.1-P | Field mustard | nucleus | 82.3 | 82.8 |
| CDX93579 | Canola | nucleus | 83.23 | 82.12 |
| CDX95079 | Canola | nucleus | 82.06 | 82.06 |
| Solyc11g067120.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 7.29 | 80.41 |
| Solyc11g067130.1.1 | Tomato | nucleus | 22.47 | 72.88 |
| Solyc11g067110.1.1 | Tomato | nucleus | 14.48 | 71.59 |
| Os02t0511900-00 | Rice | nucleus | 22.7 | 71.37 |
| KRH25189 | Soybean | nucleus | 68.71 | 66.59 |
| KRH31260 | Soybean | cytosol, nucleus, plastid | 68.01 | 66.09 |
| KRG99612 | Soybean | cytosol | 8.59 | 65.02 |
| OQU85005 | Sorghum | nucleus | 62.45 | 63.76 |
| GSMUA_Achr9P17910_001 | Banana | nucleus | 58.48 | 63.55 |
| TraesCS1B01G156600.1 | Wheat | cytosol | 60.02 | 62.77 |
| TraesCS1D01G139000.1 | Wheat | cytosol | 59.93 | 62.68 |
| HORVU1Hr1G036500.57 | Barley | mitochondrion, nucleus | 63.52 | 62.3 |
| VIT_06s0061g01610.t01 | Wine grape | nucleus | 69.59 | 62.06 |
| TraesCS1A01G130700.1 | Wheat | nucleus | 64.18 | 62.03 |
| Zm00001d016581_P004 | Maize | nucleus | 64.08 | 61.69 |
| Zm00001d043321_P001 | Maize | nucleus | 5.56 | 61.34 |
| GSMUA_Achr9P17920_001 | Banana | nucleus | 5.89 | 54.31 |
| Solyc11g067140.1.1 | Tomato | mitochondrion, nucleus | 23.03 | 52.9 |
| TraesCS1B01G417700.1 | Wheat | endoplasmic reticulum, extracellular | 3.08 | 52.8 |
| Zm00001d041354_P001 | Maize | cytosol | 7.8 | 49.55 |
| Zm00001d042827_P001 | Maize | cytosol | 7.8 | 49.55 |
| Os02t0511901-00 | Rice | nucleus | 17.0 | 49.39 |
Protein Annotations
Description
POL2BDNA polymerase epsilon catalytic subunit [Source:TAIR;Acc:AT2G27120]
Coordinates
chr2:+:11581214..11594397
Molecular Weight (calculated)
245376.0 Da
IEP (calculated)
6.840
GRAVY (calculated)
-0.325
Length
2141 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSGRRCDRRL NVQKVSAADE LETKLGFGLF SQGETRLGWL LTFASSSWED ADTGKTFSCV DLFFVTQDGS SFKTKYKFRP YLYAATKDNM ELEVEAYLRR
0101: RYERQVADIQ IVHKEDLYLK NHLSGLQKKY LKVSFDTVQQ LVEVKRDLLH IVERNLAKFN ALEAYESILS GKREQRPQDC LDSVVDLREY DVPYHVRFAI
0201: DNDVRSGQWY NVSISSTDVI LEKRTDLLQR AEVRVCAFDI ETVKLPLKFP DAEYDQIMMI SYMVDGQGFL ITNRECVGKD IEDLEYTPKP EFEGYFKVTN
0301: VTNEVELLRK WFSHMQELKP GIYVTYNGDF FDWPFIERRA SHHGIKMNEE LGFRCDQNQG ECRAKFVCHL DCFSWVKRDS YLPQGSQGLK AVTKVKLGYD
0401: PLEVNPEDMV RFAMEKPQTM ASYSVSDAVA TYYLYMTYVH PFVFSLATII PMVPDEVLRK GSGTLCEMLL MVEAYKANVV CPNKNQADPE KFYQGKLLES
0501: ETYIGGHVEC LQSGVFRSDI PTSFKLDASA YQQLIDNLGR DLEYAITVEG KMRMDSVSNF DEVKEVIREK LEKLRDDPIR EEGPLIYHLD VAAMYPNIIL
0601: TNRLQPPSIV TDEVCTACDF NGPEKTCLRK LEWVWRGVTF KGNKSEYYHL KKQIESESVD AGANMQSSKP FLDLPKVEQQ SKLKERLKKY CQKAYSRVLD
0701: KPITEVREAG ICMRENPFYV DTVRSFRDRR YEYKTLNKVW KGKLSEAKAS GNLIKIQEAH DMVVVYDSLQ LAHKCILNSF YGYVMRKGAR WYSMEMAGVV
0801: TYTGAKIIQN ARLLIERIGK PLELDTDGIW CALPGSFPEN FTFKTIDMKK FTISYPCVIL NVDVAKNNSN DQYQTLVDPV RKTYNSRSEC SIEFEVDGPY
0901: KAMIIPASKE EGILIKKRYA VFNHDGTIAE LKGFEMKRRG ELKLIKVFQA ELFDKFLHGS TLEECYSAVA AVANRWLDLL EGQGKDIADS ELLDYISESS
1001: TMSKSLADYG QQKSCAVTTA KRLADFLGDT MVKDKGLRCQ YIVAREPEGT PVSERAVPVA IFQTDDPEKK FYLQKWCKIS SYTGIRSIID WMYYKQRLHS
1101: AIQKVITIPA AMQKVANPVL RVRHPYWLEK KVCDKFRQGK IVDMFSSANK DHSTTQDNVV ADIEEFCKEN RPSVKGPKPV ARSFEVDRNH SEGKQQESWD
1201: PEFHDISLQN VDKNVDYQGW LELEKRKWKM TLTNKKKRRY SSSLFGFDLE QNINKKVCKG RVGVGSYFRR PEEALTSSYL QIIQLVQSPQ SGQFFAWVVV
1301: EGLMLKIPLT IPRVFYINSK ASIAGNFTGK CINKILPHGK PCYNLMEVNI QEDQFIKESK KLAALLADPE IEGIYETKMP LEFSAICQIG CVCKIEDTAK
1401: HRNTQDGWKL GELHRITTTE CRYLENSIPL VYLYHSTSTG RAVYVLYCHA SKLMSVVVVN PYGDKELLSS ALERQFRDRC QELSPEPFSW DGILFQVEYV
1501: DHPEAATKFL QKALCEYREE NCGATVAVIE CPDFNTTKEG VKALEDFPCV RIPFNDDDNS YQPVSWQRPA AKIAVLRCAS AIQWLDRRIA QSRYAHVPLG
1601: NFGRDWLTFT VDIFLSRALR DQQQVLWVSD NGVPDLGDIN NEETFLADEL QETSLLFPGA YRKVSVELKV HRLAVNALLK SDLVSEMEGG GFLGVNSRGS
1701: SLNDNGSFDE NNGCAQAFRV LKQLIKRLLH DACNSGNIYA DSILQHLSWW LRSPSSKLHD PALHLMLHKV MQKVFALLLT DLRRLGAIII YADFSKVIID
1801: TGKFDLSAAK TYCESLLTVM GSRDIFKLIL LEPVHYWHSL LFMDQHNYAG IRATGDEISG NEVTIEPKWS VARHLPEYIQ KDFIIIVATF IFGPWKFALE
1901: KKRGSAESLE AEMVEYLKEQ IGTRFISMIV EKIGNIRSHI KDINVSDASW ASGQAPKGDY TFEFIQIITA VLALDQNVQQ DVLVMRKILL KYIKVKECAA
2001: EAEFIDPGPS FILPNVACSN CGAYRDLDFC RDSALLTEKE WSCADPQCVK IYDKEQIESS IIQMVRQRER MYQLQDLVCN RCNQVKAAHL TEQCECSGSF
2101: RCKESGSDFH KRIEIFLDIA KRQKFRLLEE CISWILFATS C
0101: RYERQVADIQ IVHKEDLYLK NHLSGLQKKY LKVSFDTVQQ LVEVKRDLLH IVERNLAKFN ALEAYESILS GKREQRPQDC LDSVVDLREY DVPYHVRFAI
0201: DNDVRSGQWY NVSISSTDVI LEKRTDLLQR AEVRVCAFDI ETVKLPLKFP DAEYDQIMMI SYMVDGQGFL ITNRECVGKD IEDLEYTPKP EFEGYFKVTN
0301: VTNEVELLRK WFSHMQELKP GIYVTYNGDF FDWPFIERRA SHHGIKMNEE LGFRCDQNQG ECRAKFVCHL DCFSWVKRDS YLPQGSQGLK AVTKVKLGYD
0401: PLEVNPEDMV RFAMEKPQTM ASYSVSDAVA TYYLYMTYVH PFVFSLATII PMVPDEVLRK GSGTLCEMLL MVEAYKANVV CPNKNQADPE KFYQGKLLES
0501: ETYIGGHVEC LQSGVFRSDI PTSFKLDASA YQQLIDNLGR DLEYAITVEG KMRMDSVSNF DEVKEVIREK LEKLRDDPIR EEGPLIYHLD VAAMYPNIIL
0601: TNRLQPPSIV TDEVCTACDF NGPEKTCLRK LEWVWRGVTF KGNKSEYYHL KKQIESESVD AGANMQSSKP FLDLPKVEQQ SKLKERLKKY CQKAYSRVLD
0701: KPITEVREAG ICMRENPFYV DTVRSFRDRR YEYKTLNKVW KGKLSEAKAS GNLIKIQEAH DMVVVYDSLQ LAHKCILNSF YGYVMRKGAR WYSMEMAGVV
0801: TYTGAKIIQN ARLLIERIGK PLELDTDGIW CALPGSFPEN FTFKTIDMKK FTISYPCVIL NVDVAKNNSN DQYQTLVDPV RKTYNSRSEC SIEFEVDGPY
0901: KAMIIPASKE EGILIKKRYA VFNHDGTIAE LKGFEMKRRG ELKLIKVFQA ELFDKFLHGS TLEECYSAVA AVANRWLDLL EGQGKDIADS ELLDYISESS
1001: TMSKSLADYG QQKSCAVTTA KRLADFLGDT MVKDKGLRCQ YIVAREPEGT PVSERAVPVA IFQTDDPEKK FYLQKWCKIS SYTGIRSIID WMYYKQRLHS
1101: AIQKVITIPA AMQKVANPVL RVRHPYWLEK KVCDKFRQGK IVDMFSSANK DHSTTQDNVV ADIEEFCKEN RPSVKGPKPV ARSFEVDRNH SEGKQQESWD
1201: PEFHDISLQN VDKNVDYQGW LELEKRKWKM TLTNKKKRRY SSSLFGFDLE QNINKKVCKG RVGVGSYFRR PEEALTSSYL QIIQLVQSPQ SGQFFAWVVV
1301: EGLMLKIPLT IPRVFYINSK ASIAGNFTGK CINKILPHGK PCYNLMEVNI QEDQFIKESK KLAALLADPE IEGIYETKMP LEFSAICQIG CVCKIEDTAK
1401: HRNTQDGWKL GELHRITTTE CRYLENSIPL VYLYHSTSTG RAVYVLYCHA SKLMSVVVVN PYGDKELLSS ALERQFRDRC QELSPEPFSW DGILFQVEYV
1501: DHPEAATKFL QKALCEYREE NCGATVAVIE CPDFNTTKEG VKALEDFPCV RIPFNDDDNS YQPVSWQRPA AKIAVLRCAS AIQWLDRRIA QSRYAHVPLG
1601: NFGRDWLTFT VDIFLSRALR DQQQVLWVSD NGVPDLGDIN NEETFLADEL QETSLLFPGA YRKVSVELKV HRLAVNALLK SDLVSEMEGG GFLGVNSRGS
1701: SLNDNGSFDE NNGCAQAFRV LKQLIKRLLH DACNSGNIYA DSILQHLSWW LRSPSSKLHD PALHLMLHKV MQKVFALLLT DLRRLGAIII YADFSKVIID
1801: TGKFDLSAAK TYCESLLTVM GSRDIFKLIL LEPVHYWHSL LFMDQHNYAG IRATGDEISG NEVTIEPKWS VARHLPEYIQ KDFIIIVATF IFGPWKFALE
1901: KKRGSAESLE AEMVEYLKEQ IGTRFISMIV EKIGNIRSHI KDINVSDASW ASGQAPKGDY TFEFIQIITA VLALDQNVQQ DVLVMRKILL KYIKVKECAA
2001: EAEFIDPGPS FILPNVACSN CGAYRDLDFC RDSALLTEKE WSCADPQCVK IYDKEQIESS IIQMVRQRER MYQLQDLVCN RCNQVKAAHL TEQCECSGSF
2101: RCKESGSDFH KRIEIFLDIA KRQKFRLLEE CISWILFATS C
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.