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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d041354_P001 Maize cytosol 100.0 100.0
Zm00001d015562_P001 Maize nucleus 24.04 74.31
Solyc11g067120.1.1 Tomato endoplasmic reticulum, plasma membrane 14.84 25.77
Solyc11g067110.1.1 Tomato nucleus 30.27 23.56
Zm00001d016581_P004 Maize nucleus 54.9 8.32
CDX95079 Canola nucleus 51.34 8.08
Bra018641.1-P Field mustard nucleus 50.74 8.04
CDX93579 Canola nucleus 51.04 7.93
AT2G27120.2 Thale cress nucleus 49.55 7.8
AT1G08260.1 Thale cress nucleus 49.85 7.77
VIT_06s0061g01610.t01 Wine grape nucleus 51.63 7.25
KRH18030 Soybean mitochondrion, plastid 0.59 1.49
Solyc11g067140.1.1 Tomato mitochondrion, nucleus 3.86 1.39
Solyc11g067130.1.1 Tomato nucleus 1.48 0.76
Zm00001d043321_P001 Maize nucleus 0.3 0.52
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00230+2.7.7.7KEGG:00240+2.7.7.6KEGG:00240+2.7.7.7Gene3D:3.30.420.10MapMan:35.1
UniProt:A0A1D6MVL6InterPro:DNA-dir_DNA_pol_B_exonucGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824
GO:GO:0003887GO:GO:0003899GO:GO:0004518GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006259GO:GO:0006260GO:GO:0006281
GO:GO:0006351GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0008408GO:GO:0008622
GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0016787GO:GO:0071897GO:GO:0090305
InterPro:IPR036397ProteinID:ONM32851.1ProteinID:ONM32852.1ProteinID:ONM32853.1ProteinID:ONM36362.1ProteinID:ONM36363.1
PFAM:PF03104PFAM:PF04563InterPro:POL2PANTHER:PTHR10670InterPro:RNA_pol_bsu_protrusionInterPro:RNaseH-like_sf
InterPro:RNaseH_sfSUPFAM:SSF53098SUPFAM:SSF64484UniParc:UPI000845524DEnsemblPlantsGene:Zm00001d042827EnsemblPlants:Zm00001d042827_P001
EnsemblPlants:Zm00001d042827_T001:::::
Description
DNA polymerase epsilon catalytic subunit A
Coordinates
chr3:+:181264698..181270477
Molecular Weight (calculated)
38093.6 Da
IEP (calculated)
5.416
GRAVY (calculated)
-0.261
Length
337 amino acids
Sequence
(BLAST)
001: MMTEADGETA TLFPKSARLR NLTYSAPLYV DVSYRVMKKG HDCEEVTETA EYPKVFIGKG SSGQYIRATL PYIRRTYQNG KEQLACLSCT GYVLRDQNSQ
101: KTTVKSVTHS CTHHGDVKEI PYMCVGEDID DLQYTPKPEF EGYFRVKNVQ TEEIGFQCDN NQGECRAKFS CHLDCFAWVK RDSYLPQGSQ GLKAVTKAKL
201: RYDPLEVNPE DMVRFAMEQP QTMASYSVSD DVATYYLYMT YVHPFIFSLA TIIPMLPDEV LWKGSGTLCE ILLMVQPALL TKSASSSACP IVIQILIWDV
301: EVQPNRHAVL GASESRPDLI YGFNEMLVLA HLLSDDR
Best Arabidopsis Sequence Match ( AT1G08260.1 )
(BLAST)
0001: MSGDNRRRDR KDTRWSKKPK VVNTAEDELE SKLGFGLFSE GETRLGWLLT FSSSSWEDRD TGKVYSCVDL YFVTQDGFSF KTKYKFRPYF YAATKDKMEL
0101: ELEAYLRRRY ERQVADIEIV EKEDLDLKNH LSGLQKKYLK ISFDTVQQLM EVKRDLLHIV ERNQAKFDAL EAYESILAGK REQRPQDCLD SIVDLREYDV
0201: PYHVRFAIDN DVRSGQWYNV SISSTDVILE KRTDLLQRAE VRVCAFDIET TKLPLKFPDA EYDQIMMISY MVDGQGFLII NRECVGEDVE DLEYTPKPEF
0301: EGYFKVTNVK NEVELLQRWF YHMQELKPGI YVTYNGDFFD WPFIERRASH HGIKMNEELG FRCDQNQGEC RAKFACHLDC FAWVKRDSYL PQGSHGLKAV
0401: TKAKLGYDPL EVNPEDMVRF AMEKPQTMAS YSVSDAVATY YLYMTYVNPF IFSLATIIPM VPDEVLRKGS GTLCEMLLMV EAYKANVVCP NKNQADPEKF
0501: YQNQLLESET YIGGHVECLE SGVFRSDIPT SFKLDSSAYQ QLIDNLGRDL EYAITVEGKM RMDSISNYDE VKDEIKEKLE KLRDDPIREE GPLIYHLDVA
0601: AMYPNIILTN RLQPPSIVTD EICTACDFNR PGKTCLRKLE WVWRGVTFMG KKSDYYHLKK QIESEFVDAG ANIMSSKSFL DLPKVDQQSK LKERLKKYCQ
0701: KAYKRVLDKP ITEVREAGIC MRENPFYVDT VRSFRDRRYE YKTLNKVWKG KLSEAKASGN SIKIQEAQDM VVVYDSLQLA HKCILNSFYG YVMRKGARWY
0801: SMEMAGVVTY TGAKIIQNAR LLIERIGKPL ELDTDGIWCC LPGSFPENFT FKTIDMKKLT ISYPCVMLNV DVAKNNTNDQ YQTLVDPVRK TYKSHSECSI
0901: EFEVDGPYKA MIIPASKEEG ILIKKRYAVF NHDGTLAELK GFEIKRRGEL KLIKVFQAEL FDKFLHGSTL EECYSAVAAV ADRWLDLLDN QGKDIADSEL
1001: LDYISESSTM SKSLADYGEQ KSCAVTTAKR LAEFLGVTMV KDKGLRCQYI VACEPKGTPV SERAVPVAIF TTNPEVMKFH LRKWCKTSSD VGIRLIIDWS
1101: YYKQRLSSAI QKVITIPAAM QKVANPVPRV LHPDWLHKKV REKDDKFRQR KLVDMFSSAN KDVVLDTDLP VTKDNVEDIE DFCKENRPSV KGPKPIARSY
1201: EVNKKQSECE QQESWDTEFH DISFQNIDKS VNYQGWLELK KRKWKVTLEK KKKRRLGDLR SSNQVDTHEI NQKVGQGRGG VGSYFRRPEE ALTSSHWQII
1301: QLVPSPQSGQ FFAWVVVEGL MLKIPLSIPR VFYINSKVPI DEYFQGKCVN KILPHGRPCY SLTEVKIQED QFKKESKKRA ALLADPGVEG IYETKVPLEF
1401: SAICQIGCVC KIDNKAKHRN TQDGWEVGEL HMKTTTECHY LKRSIPLVYL YNSTSTGRAI YVLYCHVSKL MSAVVVDPFN GNELLPSALE RQFRDSCLEL
1501: SLDSLSWDGI RFQVHYVDHP EAAKKIIQRA ISEYREENCG PTVAVIECPD FTFMKEGIKA LDDFPCVRIP FNDDDNSYQP VSWQRPAAKI AMFRCAAAFQ
1601: WLDRRITQSR YAHVPLGNFG LDWLTFTIDI FLSRALRDQQ QVLWVSDNGV PDLGGINNEE AFFADEVQQT SLVFPGAYRK VSVELKIHNL AVNALLKSNL
1701: VNEMEGGGFM GFEQDVNPRG INSNDNTSFD ETTGCAQAFR VLKQLIHSCL TDVRKSKNIY ADSILQRLSW WLCSPSSKLH DPALHLMLHK VMQKVFALLL
1801: TDLRRLGAII IYADFSKVII DTVKFDLSAA KAYCESLLST VRNSDIFEWI LLEPVHYWHS LLFMDQYNYA GIRADDEISL DEVTIEPKWS VARHLPEYIE
1901: RDFIIIIAKF IFDPWKFAIE NKKGSSESLE AQMIEYLREQ IGSTFINMLV KKVDDIMSHM KEINVSDASR VSGQAPKGDY SLEFIQVISA VLALDQNVQQ
2001: DVLVMRKSLL KYIKVKECAA EAEFLDPGPS FILPNVACSN CDAYRDLDIC RDPALLTEKE WSCADTQCGK IYDREQMESS LLEMVRQRER MYHMQDVVCI
2101: RCNQVKAAHL TEQCECSGSF RCKESGSEFS KRMEIFMDIA KRQKFRLLEE YISWIIYGPS Y
Arabidopsis Description
POL2ADNA polymerase epsilon catalytic subunit A [Source:UniProtKB/Swiss-Prot;Acc:F4HW04]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.