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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93579 Canola nucleus 97.57 96.27
KRH18030 Soybean mitochondrion, plastid 5.42 86.57
AT1G08260.1 Thale cress nucleus 87.06 86.26
AT2G27120.2 Thale cress nucleus 82.06 82.06
Solyc11g067130.1.1 Tomato nucleus 23.91 77.58
Solyc11g067110.1.1 Tomato nucleus 15.13 74.83
Solyc11g067120.1.1 Tomato endoplasmic reticulum, plasma membrane 6.68 73.71
Os02t0511900-00 Rice nucleus 22.75 71.51
KRH25189 Soybean nucleus 69.83 67.68
KRH31260 Soybean cytosol, nucleus, plastid 68.71 66.77
KRG99612 Soybean cytosol 8.69 65.72
OQU85005 Sorghum nucleus 63.57 64.9
TraesCS1B01G156600.1 Wheat cytosol 61.37 64.19
TraesCS1D01G139000.1 Wheat cytosol 61.28 64.09
GSMUA_Achr9P17910_001 Banana nucleus 58.62 63.71
TraesCS1A01G130700.1 Wheat nucleus 65.76 63.57
HORVU1Hr1G036500.57 Barley mitochondrion, nucleus 64.78 63.54
VIT_06s0061g01610.t01 Wine grape nucleus 71.18 63.47
Zm00001d016581_P004 Maize nucleus 65.53 63.08
Zm00001d043321_P001 Maize nucleus 5.6 61.86
GSMUA_Achr9P17920_001 Banana nucleus 6.26 57.76
Solyc11g067140.1.1 Tomato mitochondrion, nucleus 22.98 52.79
TraesCS1B01G417700.1 Wheat endoplasmic reticulum, extracellular 3.04 52.0
Os02t0511901-00 Rice nucleus 17.89 51.97
Zm00001d041354_P001 Maize cytosol 8.08 51.34
Zm00001d042827_P001 Maize cytosol 8.08 51.34
Protein Annotations
KEGG:00230+2.7.7.7KEGG:00240+2.7.7.7Gene3D:1.10.132.60MapMan:13.2.3.3.1Gene3D:3.30.420.10GO:A0A078E3H2
EnsemblPlants:CDX95079ProteinID:CDX95079ProteinID:CDX95079.1ncoils:CoilInterPro:DNA-dir_DNA_pol_BInterPro:DNA-dir_DNA_pol_B_exonuc
InterPro:DNA-dir_DNA_pol_B_multi_domInterPro:DNA_pol_e_suA_CGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003824GO:GO:0003887GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006259GO:GO:0006260GO:GO:0006281GO:GO:0006950
GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0008622GO:GO:0009058GO:GO:0009987
GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00100602001InterPro:IPR036397PFAM:PF00136PFAM:PF03104PFAM:PF08490
InterPro:POL2PANTHER:PTHR10670InterPro:RNaseH-like_sfInterPro:RNaseH_sfSMART:SM00486SMART:SM01159
SUPFAM:SSF53098SUPFAM:SSF56672UniParc:UPI0004EDF95FSEG:seg::
Description
BnaC05g05920D
Coordinates
chrLK031886:-:999324..1014537
Molecular Weight (calculated)
246443.0 Da
IEP (calculated)
6.358
GRAVY (calculated)
-0.416
Length
2141 amino acids
Sequence
(BLAST)
0001: MSGDNRRWDR KDSRRSNTQK VVKTAEDELE SKLGFGLFSE GETRLGWLLT FASSSWEDPD TGKTYSCVDL YFVTQDGFYF KTKYKFRPYF YAATKEKMEL
0101: EVEAYLRRRY ERQVADIEIV EKEDLDLKNH LSGLRKKYLK VSFDTVQQLM EVKRDLSHIV ERNQAKFDAL EAYESVLAGK REQRLQDCLD SLVDLREYDV
0201: PYHVRFAVDK DVRSGQWYNV SISSTDVTLE KRTDILQRAE VRVCAFDIET TKLELKFPDA EYDQIMMISY MVDGQGFLIV NRECVGEDIE DLEYTPKPEF
0301: EGYFKVTNVS NEVDLLRKWF SHMQEVKPGI YVTYNGDFFD WPFIERRASH HEIKMNEELG FRCDHNQGEC RAKFVCHLDC FAWVKRDSYL PQGSHGLKAV
0401: TKAKLGYDPL EVNPEDMVQF AMEKPQTMAS YSVSDAVATY YLYMTYVHPF IFSLATIIPM VPDEVLRKGS GTLCEMLLMV EAYNANVICP NKNQADPEKF
0501: HKSHLLESET YIGGHVECLE SGQLIDNLDR DLEYAITVEG KMRMDSVSNY DEVKEKIKEK LEKLRDYPIR EEGPLIYHLD VAAMYPNIIL TNRLQPPSIV
0601: TNEICTACDF NRPGKTCLRK LEWVWRGVTF MAKKSDYYHL KKQIESEFVD TGANIQSSKS FLDLPKVEQQ SKLKDRLKKY CQKAYRRVLD KPDTEVREAG
0701: ICMRENPFYV DTVRSFRDRR YEYKTLNKVW KGKLSEAKAS GNSIKIQEAQ DMVVVYDSLQ LAHKCILNSF YGYVMRKGAR WYSMEMAGVV TYTGAKIIQN
0801: ARLLIERIGR PLELDTDGIW CALPGSFPEN FTFKTIDMKK FTISYPCVML NVDVAKNNTN DQYQTLVDPV RKTYESHSEC SIEFEVDGPY KAMIIPASKE
0901: EGVLLKKRYA VFNHDGTLAE LKGFEIKRRG ELKLIKVFQA ELFDKFLHGS TLEECYSAVA AVANRWLDLL DNQGKDIADS ELLDYISESS TMSKSLADYG
1001: EQKSCAVTTA KRLADFLGDT MVKDKGLRCQ YIVACEPKGS PVSERAVPVA IFTLSKTEPE RMKFYLGKWC KQRLSSDHKV DIRLIIDWSY YKQRLSSAIQ
1101: KVITIPAAMQ KVANPVPRVL HPDWLHKKVR EKDDKFRQRK LADMFSSANK DGVLDKNHSV AQDDVNDIED FCKENKPGVK GPKPVARSYE VNKEQFGREQ
1201: QESNDPKCDD DISFENIDKN VDYQGWLEVR KRKWKGIVEK KKKRRLGDQR SLKQIESHEI KKKVSKVRRG VGSFFRRPEE ALTSSHWQII QLVPSPQSGQ
1301: FFAWVVVEGL MLKIPLTIPR VEIQEEQFRK ESKKLAALLA DPEIEGIYET KVPLEFSAIC QIGCVCKIDN TAKRRNTQDG WKVGELHMKT TTECRYLERS
1401: IPLLYLYHST STLRAIYVLY CHASKLMSAV VVNPYGDKEL LPSALERQFR DGCQELSLES LSWDGIVFQV DYVDHAEAAE KIIQKAISEY REENSGPTVV
1501: VIECPDFNSI KDGIKALDDF PCVRIPFNGD DNSYQPVSWQ RPAAKLAMFR CAAAFQWLDR RISQSRYAHV PLGNFGLDWL TFTVDIFLSR ALRDQQQVLW
1601: VSDNGVPDLG GLNNEETLFA DEVQQTSLVY PGAYRKISVE LKIHHLAVDA LLKSNLVSEM EGGDFLGFEQ DGNPRGSSSN ANSSFDETTG CAQAFRVLKQ
1701: LIHSCLTDVC KSRNIYADSI LQRLSWWLCS PCSKLHDPAL HLMLHKVMQK VFALLLTDLR RLGATIIFAD FSKIVIDTGK FDLSAAKAYC DSLLTAVGNS
1801: DIFEWISLEP AHYWHSLLFM DQYNYAGIQA TDDEISPDEV TIEPKWSVAR LFPEYIQRDF VIIVAKFIFD PWKFSLEKKR GSSESLEAQM VEYLKEQIPS
1901: SFFSMLVAKI NDIVSHMKEM DVSDASRDSQ APKRDYALEL VQTICAVMGL DQNVEQDVRT YPSEILFLKL CFAVMKRNLL KYINVKEFAA EAEFLDPGPS
2001: FILPNVACSN CDAYRDLDIG RDPALLTEKE WCCVDSQCGK IYDREQMENS LLQMVRQRER MYHMQDLVCI RCNQVKAAHL TEQCECSGSF RCKESGSEFL
2101: KRMEIFLDIA KRQKFKLLEE CTSWILDPTG SWQTNTGRHH S
Best Arabidopsis Sequence Match ( AT1G08260.1 )
(BLAST)
0001: MSGDNRRRDR KDTRWSKKPK VVNTAEDELE SKLGFGLFSE GETRLGWLLT FSSSSWEDRD TGKVYSCVDL YFVTQDGFSF KTKYKFRPYF YAATKDKMEL
0101: ELEAYLRRRY ERQVADIEIV EKEDLDLKNH LSGLQKKYLK ISFDTVQQLM EVKRDLLHIV ERNQAKFDAL EAYESILAGK REQRPQDCLD SIVDLREYDV
0201: PYHVRFAIDN DVRSGQWYNV SISSTDVILE KRTDLLQRAE VRVCAFDIET TKLPLKFPDA EYDQIMMISY MVDGQGFLII NRECVGEDVE DLEYTPKPEF
0301: EGYFKVTNVK NEVELLQRWF YHMQELKPGI YVTYNGDFFD WPFIERRASH HGIKMNEELG FRCDQNQGEC RAKFACHLDC FAWVKRDSYL PQGSHGLKAV
0401: TKAKLGYDPL EVNPEDMVRF AMEKPQTMAS YSVSDAVATY YLYMTYVNPF IFSLATIIPM VPDEVLRKGS GTLCEMLLMV EAYKANVVCP NKNQADPEKF
0501: YQNQLLESET YIGGHVECLE SGVFRSDIPT SFKLDSSAYQ QLIDNLGRDL EYAITVEGKM RMDSISNYDE VKDEIKEKLE KLRDDPIREE GPLIYHLDVA
0601: AMYPNIILTN RLQPPSIVTD EICTACDFNR PGKTCLRKLE WVWRGVTFMG KKSDYYHLKK QIESEFVDAG ANIMSSKSFL DLPKVDQQSK LKERLKKYCQ
0701: KAYKRVLDKP ITEVREAGIC MRENPFYVDT VRSFRDRRYE YKTLNKVWKG KLSEAKASGN SIKIQEAQDM VVVYDSLQLA HKCILNSFYG YVMRKGARWY
0801: SMEMAGVVTY TGAKIIQNAR LLIERIGKPL ELDTDGIWCC LPGSFPENFT FKTIDMKKLT ISYPCVMLNV DVAKNNTNDQ YQTLVDPVRK TYKSHSECSI
0901: EFEVDGPYKA MIIPASKEEG ILIKKRYAVF NHDGTLAELK GFEIKRRGEL KLIKVFQAEL FDKFLHGSTL EECYSAVAAV ADRWLDLLDN QGKDIADSEL
1001: LDYISESSTM SKSLADYGEQ KSCAVTTAKR LAEFLGVTMV KDKGLRCQYI VACEPKGTPV SERAVPVAIF TTNPEVMKFH LRKWCKTSSD VGIRLIIDWS
1101: YYKQRLSSAI QKVITIPAAM QKVANPVPRV LHPDWLHKKV REKDDKFRQR KLVDMFSSAN KDVVLDTDLP VTKDNVEDIE DFCKENRPSV KGPKPIARSY
1201: EVNKKQSECE QQESWDTEFH DISFQNIDKS VNYQGWLELK KRKWKVTLEK KKKRRLGDLR SSNQVDTHEI NQKVGQGRGG VGSYFRRPEE ALTSSHWQII
1301: QLVPSPQSGQ FFAWVVVEGL MLKIPLSIPR VFYINSKVPI DEYFQGKCVN KILPHGRPCY SLTEVKIQED QFKKESKKRA ALLADPGVEG IYETKVPLEF
1401: SAICQIGCVC KIDNKAKHRN TQDGWEVGEL HMKTTTECHY LKRSIPLVYL YNSTSTGRAI YVLYCHVSKL MSAVVVDPFN GNELLPSALE RQFRDSCLEL
1501: SLDSLSWDGI RFQVHYVDHP EAAKKIIQRA ISEYREENCG PTVAVIECPD FTFMKEGIKA LDDFPCVRIP FNDDDNSYQP VSWQRPAAKI AMFRCAAAFQ
1601: WLDRRITQSR YAHVPLGNFG LDWLTFTIDI FLSRALRDQQ QVLWVSDNGV PDLGGINNEE AFFADEVQQT SLVFPGAYRK VSVELKIHNL AVNALLKSNL
1701: VNEMEGGGFM GFEQDVNPRG INSNDNTSFD ETTGCAQAFR VLKQLIHSCL TDVRKSKNIY ADSILQRLSW WLCSPSSKLH DPALHLMLHK VMQKVFALLL
1801: TDLRRLGAII IYADFSKVII DTVKFDLSAA KAYCESLLST VRNSDIFEWI LLEPVHYWHS LLFMDQYNYA GIRADDEISL DEVTIEPKWS VARHLPEYIE
1901: RDFIIIIAKF IFDPWKFAIE NKKGSSESLE AQMIEYLREQ IGSTFINMLV KKVDDIMSHM KEINVSDASR VSGQAPKGDY SLEFIQVISA VLALDQNVQQ
2001: DVLVMRKSLL KYIKVKECAA EAEFLDPGPS FILPNVACSN CDAYRDLDIC RDPALLTEKE WSCADTQCGK IYDREQMESS LLEMVRQRER MYHMQDVVCI
2101: RCNQVKAAHL TEQCECSGSF RCKESGSEFS KRMEIFMDIA KRQKFRLLEE YISWIIYGPS Y
Arabidopsis Description
POL2ADNA polymerase epsilon catalytic subunit A [Source:UniProtKB/Swiss-Prot;Acc:F4HW04]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.