CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69674
CDX83257
CDX84793
CDX85673
CDX91149
CDX93579
CDX95079
CDX97221
CDY10780
CDY15409
CDY23948
CDY24744
CDY31165

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31270.1	CDX93579	AT1G08260.1	22773747
AT2G31270.1	CDX95079	AT1G08260.1	22773747
AT2G31270.1	CDX84793	AT2G31270.1	22773747
AT2G31270.1	CDY10780	AT2G31270.1	22773747
AT2G31270.1	CDY15409	AT2G31270.1	22773747
AT2G31270.1	CDY23948	AT2G31270.1	22773747
AT2G31270.1	CDY24744	AT2G31270.1	22773747
AT2G31270.1	CDX69674	AT5G13060.1	18818695
AT2G31270.1	CDX85673	AT5G13060.1	18818695
AT2G31270.1	CDX91149	AT5G13060.1	18818695
AT2G31270.1	CDX97221	AT5G13060.1	18818695
AT2G31270.1	CDX83257	AT5G22110.1	22773747
AT2G31270.1	CDY31165	AT5G22110.1	22773747

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84793	Canola	nucleus, plastid	67.54	60.8
CDY24744	Canola	nucleus	70.56	59.73
CDY10780	Canola	nucleus	69.35	58.6
CDY23948	Canola	nucleus, plastid	64.11	57.5
AT2G31270.1	Thale cress	nucleus, plastid	59.27	51.49
CDY67450	Canola	cytosol	19.76	36.57
VIT_07s0005g03090.t01	Wine grape	nucleus	38.71	33.28
Solyc06g008510.2.1	Tomato	nucleus, plastid	37.1	31.56
CDX76137	Canola	cytosol, plastid	29.84	31.36
CDX76134	Canola	cytosol, plastid	29.03	30.84
CDY13226	Canola	cytosol, plastid	29.64	30.82
PGSC0003DMT400028257	Potato	nucleus, plastid	36.09	30.7
GSMUA_Achr10P...	Banana	nucleus	32.66	29.72
Solyc01g006140.2.1	Tomato	nucleus	33.67	29.2
HORVU2Hr1G003370.11	Barley	cytosol	27.22	28.85
KRH32170	Soybean	plastid	34.48	28.69
TraesCS2D01G023500.1	Wheat	endoplasmic reticulum	24.6	27.92
KRH19542	Soybean	nucleus	34.68	27.79
EER89201	Sorghum	nucleus	31.25	26.96
Zm00001d045354_P002	Maize	nucleus	30.85	26.7
TraesCS2D01G023000.1	Wheat	cytosol, plastid	29.03	26.67
TraesCS2A01G022200.1	Wheat	plastid	29.84	25.61
TraesCS2B01G030600.1	Wheat	plastid	29.44	25.17
Os04t0185100-01	Rice	cytosol, mitochondrion, plastid	29.64	25.0
GSMUA_Achr8P03390_001	Banana	cytosol, nucleus, plastid	16.73	21.56
HORVU4Hr1G047140.6	Barley	plastid	9.27	21.1
GSMUA_Achr9P25190_001	Banana	endoplasmic reticulum, vacuole	31.85	16.54

Protein Annotations

EnsemblPlants:CDY15409	EnsemblPlantsGene:GSBRNA2T00085720001	Gene3D:1.10.10.1420	InterPro:CDT1_Gemini-bd-like	InterPro:Cdt1_C	InterPro:WH_DNA-bd_sf
PANTHER:PTHR28637	PANTHER:PTHR28637:SF6	PFAM:PF16679	ProteinID:CDY15409	ProteinID:CDY15409.1	SEG:seg
SMART:SM01075	SUPFAM:SSF46785	UniParc:UPI0004EEF338	UniProt:A0A078FR92	MapMan:13.2.1.3	:

Description

BnaC04g42140DBnaC04g42140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR92]

Coordinates

chrLK032054:-:673176..675259

Molecular Weight (calculated)

55218.7 Da

IEP (calculated)

8.552

GRAVY (calculated)

-0.588

Length

496 amino acids

Sequence
(BLAST)

001: MTAPGSSKSI PFKSKKKLFD PPSTVNPYSS SLPLHTPENT LIRPKNQSVA PPVKENRKTA GSHRRSEDPV DKASSAKRQL VFSSSSDQEK LPEKYEALGK
101: LFDALESSIL LSKLRGSKPT FSNVSGKIEP TSCMKPDLHV TLKADSVEEN DKLKSERNKI SLRNVFRTRL ADFVKAHPQG DEVPEEELPE GFNRRKPNED
201: SRDEVRRFSS LMEEMASIPA ARLISSFSKV PSSPVKPQIN VGPTSSLARP ALCMVNLVPT PASVLSTPAK MESTPVIVAS TPPEFASTPS RLFSAACLQK
301: RSSGDTSPDD VSTDPPFKLA RRCLLSSSRS LNFDSYTKDK KAVDVADIDQ VPVEDDDDEI LSILPDELRQ SIKEQETKAI EESNPAISEA KRRRKMVACL
401: PKLFNVIHYL IQSIRRWILT KEELVHKNIA GHSDVTDRKE VEEQLVLMQE LVQEWIYEKR STSGDLLVCI NKLASPQTIR SQLEEENKKA LATSYP

Best Arabidopsis Sequence Match ( AT2G31270.1 )
(BLAST)

001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S

Arabidopsis Description

CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.