Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 49.09 | 34.68 |
| TraesCS2D01G023500.1 | Wheat | endoplasmic reticulum | 34.29 | 30.21 |
| HORVU2Hr1G003370.11 | Barley | cytosol | 35.06 | 28.85 |
| EER89201 | Sorghum | nucleus | 36.88 | 24.7 |
| TraesCS2D01G023000.1 | Wheat | cytosol, plastid | 33.77 | 24.07 |
| CDY67450 | Canola | cytosol | 16.62 | 23.88 |
| Os04t0185100-01 | Rice | cytosol, mitochondrion, plastid | 36.36 | 23.81 |
| Zm00001d045354_P002 | Maize | nucleus | 35.06 | 23.56 |
| Bra014795.1-P | Field mustard | cytosol | 20.78 | 22.73 |
| TraesCS2B01G030600.1 | Wheat | plastid | 34.03 | 22.59 |
| TraesCS2A01G022200.1 | Wheat | plastid | 33.77 | 22.49 |
| VIT_07s0005g03090.t01 | Wine grape | nucleus | 31.69 | 21.14 |
| CDX76134 | Canola | cytosol, plastid | 23.64 | 19.49 |
| AT2G31270.1 | Thale cress | nucleus, plastid | 28.57 | 19.26 |
| CDY24744 | Canola | nucleus | 29.09 | 19.11 |
| CDX84793 | Canola | nucleus, plastid | 27.27 | 19.06 |
| Bra022834.1-P | Field mustard | nucleus, plastid | 27.27 | 19.06 |
| CDY23948 | Canola | nucleus, plastid | 27.27 | 18.99 |
| AT3G54710.1 | Thale cress | cytosol, plastid | 23.64 | 18.72 |
| Solyc06g008510.2.1 | Tomato | nucleus, plastid | 28.31 | 18.7 |
| KRH32170 | Soybean | plastid | 28.83 | 18.62 |
| Solyc01g006140.2.1 | Tomato | nucleus | 27.53 | 18.53 |
| PGSC0003DMT400028257 | Potato | nucleus, plastid | 28.05 | 18.52 |
| Bra014797.1-P | Field mustard | cytosol, plastid | 22.08 | 18.48 |
| CDX76137 | Canola | cytosol, plastid | 22.6 | 18.43 |
| CDY13226 | Canola | cytosol, plastid | 22.6 | 18.24 |
| CDY10780 | Canola | nucleus | 27.53 | 18.06 |
| Bra018272.1-P | Field mustard | nucleus | 27.53 | 18.06 |
| GSMUA_Achr9P25190_001 | Banana | endoplasmic reticulum, vacuole | 43.9 | 17.7 |
| KRH19542 | Soybean | nucleus | 27.79 | 17.29 |
| CDY15409 | Canola | nucleus, plastid | 21.56 | 16.73 |
| HORVU4Hr1G047140.6 | Barley | plastid | 9.09 | 16.05 |
| GSMUA_Achr2P10650_001 | Banana | nucleus | 23.12 | 15.61 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P03390_001 | EnsemblPlants:GSMUA_Achr8T03390_001 | EnsemblPlantsGene:GSMUA_Achr8G03390_001 | InterPro:Cdt1_C | InterPro:WH_DNA-bd_sf | PANTHER:PTHR28637 |
| PANTHER:PTHR28637:SF5 | PFAM:PF16679 | SEG:seg | SUPFAM:SSF46785 | UniParc:UPI000295852E | UniProt:M0TM91 |
| MapMan:13.2.1.3 | : | : | : | : | : |
Description
CDT1A - Putative DNA replication initiation protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G03390_001]
Coordinates
chr8:-:2343620..2346506
Molecular Weight (calculated)
42794.7 Da
IEP (calculated)
7.822
GRAVY (calculated)
-0.289
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLTETVSAF RCFTYAHFAQ SMYIMPEAIM IKKVVLHDET TCCVKSELQI TLQVDAVAEN INGESGSKYS ILTKLFRERI VDFYNGHPQE DEVPEVQLPD
101: PFNQTKPSVL PRASNFNFEP TRTESTSSAA TQQQFLVPQA WPKDDLSVSA ASSPIKCTSN PPIIKKSLLC SSISNTLSSN CRISEEETHM LVRADNSPPK
201: EPNIPEETPA KTVSTPLRLM CNTPELPTPK RRRPSPSCDS TPLNESLKRS TRTKLFMTPE KSAKAGEEEN TGRSILLFSL ALASCSPLPK NVGIMLQPKQ
301: KAVEEEKEAG VANAIKRQKL IASLPNTFDM IRLIFCSKMT SAMTKQEPVN ITLKSLMLLH LKLLLELVPD WTSEKIAYGG HIFCV
101: PFNQTKPSVL PRASNFNFEP TRTESTSSAA TQQQFLVPQA WPKDDLSVSA ASSPIKCTSN PPIIKKSLLC SSISNTLSSN CRISEEETHM LVRADNSPPK
201: EPNIPEETPA KTVSTPLRLM CNTPELPTPK RRRPSPSCDS TPLNESLKRS TRTKLFMTPE KSAKAGEEEN TGRSILLFSL ALASCSPLPK NVGIMLQPKQ
301: KAVEEEKEAG VANAIKRQKL IASLPNTFDM IRLIFCSKMT SAMTKQEPVN ITLKSLMLLH LKLLLELVPD WTSEKIAYGG HIFCV
001: MSTPGSSRSI PFKSKKRLVM DSPSSKSQTG NPNPSSVALP TPEKPLENML SRSRNRSVAL SVKEIRQAAG SRRRSEDPVA SSAKSRLFFD SSSSSPSKRK
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
101: SSNKNAEKEK LPEKYENLGK FFEALDNSML LSKLRGSKPT FSNISKQIEH LTERRFCYSH LAQIKHILPE AIEIKRVLIH DETTCCMKPD LHVTLNADAV
201: EYNDKSKSES KKIALRKVFR ARLADFVKAH PQGDEVPEEP LPEPFNRRKP VENSNVEVKR VSSLMEEMAS IPASKLFSSP ITSTPVKTTS SLAKPTSSQI
301: NIAPTPTKPT STPAKQTLSE INILPTPVKP VSTLAKFPST PAIIDSTPVI TATPPEFAST PARLMSTSLA ARPLKRSNGH TNPDDISADP PTKLVRRSLS
401: LNFDSYPEDE RTMDFTDDIP IDQVPEEDVS SDDEILSILP DKLRHAIKEQ ERKAIEDQNP AISLAKRRRK MIACLPKLFN VIHYLIQSIR RWVITKEELV
501: HKIIAGHSDI TDRKEVEEQL ILLQEIVPEW MSEKKSSSGD VLVCINKLAS PLTIRSRLEE ENKQEMAPLL S
Arabidopsis Description
CDT1ACDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.