Factsheet for GSMUA_Achr10P03440_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 1
extracellular 3
plasma membrane 4
endoplasmic reticulum 2
vacuole 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	25.81	64.74
GSMUA_Achr10P...	Banana	endoplasmic reticulum	52.07	57.95
GSMUA_Achr10P...	Banana	cytosol	25.81	56.0
GSMUA_Achr2P00090_001	Banana	cytosol	23.27	54.01
GSMUA_Achr10P...	Banana	cytosol	11.52	53.19
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	24.42	52.48
GSMUA_Achr2P00100_001	Banana	cytosol	22.35	52.15
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	27.42	47.98
CDX70871	Canola	cytosol	25.12	40.82
PGSC0003DMT400051857	Potato	endoplasmic reticulum	12.67	30.05
GSMUA_Achr9P17600_001	Banana	cytosol	51.38	29.97
VIT_05s0020g03020.t01	Wine grape	cytosol	48.62	29.59
KRG91259	Soybean	cytosol	46.31	28.43
KRH35552	Soybean	cytosol	46.31	28.43
KRH27617	Soybean	cytosol	46.31	28.39
KRH77872	Soybean	cytosol	46.08	28.33
VIT_07s0104g00020.t01	Wine grape	cytosol	45.39	27.94
AT5G19330.1	Thale cress	cytosol	44.7	27.32
PGSC0003DMT400051860	Potato	cytosol	44.47	27.22
CDX92539	Canola	cytosol	43.78	27.1
Solyc06g084250.2.1	Tomato	cytosol	43.55	26.81
Solyc09g065210.2.1	Tomato	cytosol	43.55	26.69
PGSC0003DMT400033530	Potato	cytosol	43.55	26.69
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	43.55	26.43
CDX88895	Canola	cytosol, nucleus, plastid	43.55	26.43
Bra002228.1-P	Field mustard	nucleus	44.01	26.38
CDY51336	Canola	mitochondrion	13.82	25.64
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	8.06	24.14
Bra023389.1-P	Field mustard	plastid	34.33	22.89
KRG95533	Soybean	cytosol	36.18	22.02
KRH67208	Soybean	cytosol	35.02	21.56
CDX69674	Canola	cytosol	34.1	20.93
Bra008860.1-P	Field mustard	plastid	33.87	20.79
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	35.02	20.62
CDX97221	Canola	cytosol, mitochondrion	33.41	20.51
CDX85673	Canola	plastid	34.56	20.46
CDX91149	Canola	cytosol, mitochondrion	34.1	20.3
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	2.53	17.46
Bra030036.1-P	Field mustard	plastid	7.14	17.22
CDY13990	Canola	nucleus	44.7	15.34
CDY15719	Canola	plastid	4.84	15.11
GSMUA_Achr10P...	Banana	cytosol	2.07	10.84
GSMUA_Achr2P00070_001	Banana	extracellular	3.46	9.8
GSMUA_Achr10P...	Banana	extracellular	1.38	5.77
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	0.92	1.43

Protein Annotations

EnsemblPlants:GSMUA_Achr10P03440_001	EnsemblPlants:GSMUA_Achr10T03440_001	EnsemblPlantsGene:GSMUA_Achr10G03440_001	Gene3D:1.25.10.10	Gene3D:3.30.710.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:IPR011989	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	SEG:seg	SUPFAM:SSF48371
SUPFAM:SSF54695	TMHMM:TMhelix	UniParc:UPI0002953E1B	UniProt:M0RF21	MapMan:35.1	:

Description

ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G03440_001]

Coordinates

chr10:-:11288870..11293138

Molecular Weight (calculated)

48897.8 Da

IEP (calculated)

8.235

GRAVY (calculated)

0.231

Length

434 amino acids

Sequence
(BLAST)

001: MFLKKMFLTH NQAGIVYNGG LVPLLKLLDS KNGCLQHNAA FAFYGIAENE ANISDFIKVG GVQKLQDGEF IIQATKDCVA KTMKRLEEKI NGRVLKHLLY
101: LMRVGEKAVQ RRIALALAHL QHILNIGLDL LLELLGSTNL KQQQDASVAL YKLAKKSLTL CSVDAASSSP SPQVYLGEQY VNSSTLSYVT FVIEGCGLFL
201: PYVVFSFKQL HSTFKNVVTY EKDARDVEIP NIRWEVFESM MRFIYTGSGL KLLCEYAIAQ EVCVDNVSSM YELSEAFHAM SLRHTCVMFI LEQFEKINSS
301: RAFPSNPANN SRDPQLICWS LSAPNIYFRR GCNSIIFPSP KLNCLFLYLN CLVFLNGGLL VADTMNSYSS NDFNIMQAFF SLLKSVHIIS TRVFGENAFP
401: SMICVFNILL TIQNFFLAIV KCFKLGILYR FSDD

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.