CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35552	Soybean	cytosol	96.18	96.18
KRH27617	Soybean	cytosol	88.68	88.56
KRH77872	Soybean	cytosol	88.26	88.39
VIT_05s0020g03020.t01	Wine grape	cytosol	82.89	82.19
AT5G19330.1	Thale cress	cytosol	78.36	78.03
CDX92539	Canola	cytosol	76.8	77.46
Bra002228.1-P	Field mustard	nucleus	78.08	76.24
CDX88895	Canola	cytosol, nucleus, plastid	76.94	76.08
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	76.94	76.08
Os05t0398100-01	Rice	cytosol	23.34	73.66
GSMUA_Achr9P17600_001	Banana	cytosol	77.37	73.52
HORVU1Hr1G062160.1	Barley	cytosol	74.4	73.06
TraesCS1A01G249400.1	Wheat	cytosol	74.4	71.86
TraesCS1B01G260100.1	Wheat	cytosol	74.68	71.16
EES19490	Sorghum	nucleus	74.96	71.14
TraesCS1D01G248900.1	Wheat	cytosol	74.54	71.02
GSMUA_Achr10P...	Banana	endoplasmic reticulum	36.78	66.67
Zm00001d038134_P001	Maize	cytosol	73.97	65.79
Zm00001d010341_P002	Maize	cytosol	70.86	65.32
GSMUA_Achr10P...	Banana	cytosol	15.13	61.85
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	20.65	58.87
KRG95533	Soybean	cytosol	58.98	58.49
KRH67208	Soybean	cytosol	57.71	57.87
GSMUA_Achr10P...	Banana	cytosol	16.27	57.5
GSMUA_Achr2P00090_001	Banana	cytosol	14.71	55.62
GSMUA_Achr2P00100_001	Banana	cytosol	14.43	54.84
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	14.71	51.49
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	28.43	46.31
KRH48502	Soybean	cytosol	9.48	43.79
CDY13990	Canola	nucleus	76.52	42.77

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100796391	Gene3D:3.30.710.10	MapMan:35.1	EMBL:ACUP02012673	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:BTB/POZ_dom	EnsemblPlantsGene:GLYMA_20G143500	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
UniProt:I1NGC0	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989	EnsemblPlants:KRG91259	ProteinID:KRG91259
ProteinID:KRG91259.1	PFAM:PF00514	PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315
PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695
UniParc:UPI000233DD5F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:38203917..38211988

Molecular Weight (calculated)

77893.7 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.111

Length

707 amino acids

Sequence
(BLAST)

001: MELQRRQDQS LSQRKGQKRK LDEEQHHEDR QILPAPPTAD ERAALLSDVA EQVSILESTF TWNEADRSAA KRATHALADL AKNEDVVNVI VEGGAIPALV
101: KHLQAPPLSD LVQHPLPFEH EVEKGSAFAL GLLAVKPEHQ QLIVDSSALT HLVDLLKRHR NGLTSRAINS LIRRAADAIT NLAHENSNIK TRVRMEGGIP
201: PLAHLLDFAD AKVQRAAAGA LRTLAFKNDE NKNQIVECNA LPTLILMLRS EDAAVHYEAV GVIGNLVHSS PNIKKEVLLA GALQPVIGLL SSCCSESQRE
301: AALLLGQFAA TDSDCKVHIV QRGAVRPLIE MLQSPDVQLR EMSAFALGRL AQDPHNQAGI AHNGGLVPLL KLLDSKNGSL QHNAAFALYG LADNEDNVSD
401: FIRVGGVQRL QDGEFIVQAT KDCVAKTLKR LEEKIHGRVL NHLLYLMRAS EKGCQRQVAL ALAHLCSSDD QRIIFIDHYG LELLIGLLGS SSSKQQLDGA
501: VALSKLANKA LTLSPVDAAP PSPTPQVYLG EQYVNNATLS DVTFLVEGKR FYAHRICLLA SSDAFRAMFD GGYTEKEARD IEIPNIRWEV FELMMRFVYC
601: GSVDVTLDIA LDLLRAANQY LLEGLKRLCE YTIAQDISPE NVSSMYELSE AFNAISLRHA CILFILEQFD KLSSRPGHSL LIQRIIPEIR NYFVKALTKA
701: NSHDNQL

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.