Factsheet for GSMUA_Achr2P00100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	46.77	50.29
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	60.75	45.56
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	46.77	43.07
GSMUA_Achr10P...	Banana	cytosol	36.02	33.5
GSMUA_Achr10P...	Banana	endoplasmic reticulum	67.74	32.31
GSMUA_Achr2P00090_001	Banana	cytosol	32.26	32.09
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	52.15	22.35
CDY51336	Canola	mitochondrion	27.42	21.79
CDY15719	Canola	plastid	11.83	15.83
VIT_05s0020g03020.t01	Wine grape	cytosol	59.14	15.43
GSMUA_Achr9P17600_001	Banana	cytosol	59.68	14.92
KRH77872	Soybean	cytosol	55.91	14.73
KRH27617	Soybean	cytosol	55.91	14.69
AT5G19330.1	Thale cress	cytosol	55.91	14.65
KRH35552	Soybean	cytosol	55.38	14.57
KRG91259	Soybean	cytosol	54.84	14.43
Bra002228.1-P	Field mustard	nucleus	55.91	14.36
PGSC0003DMT400051860	Potato	cytosol	53.76	14.1
Solyc06g084250.2.1	Tomato	cytosol	52.69	13.9
Solyc09g065210.2.1	Tomato	cytosol	52.69	13.84
PGSC0003DMT400033530	Potato	cytosol	52.69	13.84
CDX88895	Canola	cytosol, nucleus, plastid	52.69	13.71
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	52.69	13.71
VIT_07s0104g00020.t01	Wine grape	cytosol	51.08	13.48
CDX92539	Canola	cytosol	48.92	12.98
Bra023389.1-P	Field mustard	plastid	44.62	12.75
CDX85673	Canola	plastid	47.31	12.01
CDX91149	Canola	cytosol, mitochondrion	46.77	11.93
CDX69674	Canola	cytosol	44.62	11.74
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	46.24	11.67
Bra008860.1-P	Field mustard	plastid	44.09	11.6
KRH67208	Soybean	cytosol	42.47	11.21
CDX97221	Canola	cytosol, mitochondrion	42.47	11.17
KRG95533	Soybean	cytosol	41.94	10.94
Bra030036.1-P	Field mustard	plastid	9.68	10.0
GSMUA_Achr10P...	Banana	extracellular	5.38	9.62
GSMUA_Achr2P00070_001	Banana	extracellular	6.99	8.5
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	2.69	7.94
CDY13990	Canola	nucleus	47.85	7.04
GSMUA_Achr10P...	Banana	cytosol	2.69	6.02
PGSC0003DMT400051857	Potato	endoplasmic reticulum	5.38	5.46
GSMUA_Achr10P...	Banana	cytosol	2.69	5.32
CDX70871	Canola	cytosol	7.53	5.24
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	3.23	4.14
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	1.61	1.07

Protein Annotations

EnsemblPlants:GSMUA_Achr2P00100_001	EnsemblPlants:GSMUA_Achr2T00100_001	EnsemblPlantsGene:GSMUA_Achr2G00100_001	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold
PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	SEG:seg	SUPFAM:SSF48371	UniParc:UPI000296B00F	UniProt:M0S3V1
MapMan:35.1	:	:	:	:	:

Description

Putative Vacuolar protein 8 [Source:GMGC_GENE;Acc:GSMUA_Achr2G00100_001]

Coordinates

chr2:-:291767..293033

Molecular Weight (calculated)

20717.5 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.069

Length

186 amino acids

Sequence
(BLAST)

001: MRNNTDSHDQ AGIVYNGSLV PLLKLLDSKN GCLQHIVAFA LYGIAENEDN VSDFIKVGGV QKLQDGEFII QATKDRVAKT MKRLEEKING PVLKHLLYLM
101: RVGEKAVQRR IALALAHLCS PEDQRTIFID DDGLDLLLEL LGSTNLKQQQ DASVALYKVA KKIPDSILLM QLLHPPHLRF AKIGIP

Best Arabidopsis Sequence Match ( AT5G13060.1 )
(BLAST)

001: MIISKSFKAP LKFSVKSSTA PVISNHPPME NHPKRQRTTR LAARNLKRKL SHNTDGAPIV TQLIDIDDEP IDLVVAIRRH VEVLNSSFSD PDFDHEAVKE
101: AAADIADLAK IDENVEIIVE NGAIPALVRY LESPLVVCGN VPKSCEHKLE KDCALALGLI AAIQPGYQQL IVDAGAIVPT VKLLKRRGEC GECMFANAVI
201: RRAADIITNI AHDNPRIKTN IRVEGGIAPL VELLNFPDVK VQRAAAGALR TVSFRNDENK SQIVELNALP TLVLMLQSQD STVHGEAIGA IGNLVHSSPD
301: IKKEVIRAGA LQPVIGLLSS TCLETQREAA LLIGQFAAPD SDCKVHIAQR GAITPLIKML ESSDEQVVEM SAFALGRLAQ DAHNQAGIAH RGGIISLLNL
401: LDVKTGSVQH NAAFALYGLA DNEENVADFI KAGGIQKLQD DNFTVQPTRD CVVRTLKRLQ NKIHGPVLNQ LLYLMRTAEK TVQIRIALAL AHLCDPKDGK
501: LIFIDNNGVE FLLELLYFSS NKQQRYSSSA LYELAKKATS FAPEDSAPCS PTQQVFLGEK FVNNPTMSDV TFLIDGKQFY AHKIGLVASS DIFRAMFDGL
601: YKERNAQNVE IPNIRWEVFE LMMKFIYSGR INIAKHLAKD LLVAADQYLL EGLKRQCEYT IAQEICLDNI PEMYELADTF NASALRRACT LFVLEHFTKL
701: SSQLWFAKFV KQIIPEIRSY MTDILTRPVE ASPPTVV

Arabidopsis Description

ABAP1ARMADILLO BTB ARABIDOPSIS PROTEIN 1 [Source:UniProtKB/Swiss-Prot;Acc:B7U179]
SUBAcon: [cytosol,plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.