Factsheet for PGSC0003DMT400051860

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g084250.2.1	Tomato	cytosol	96.33	96.88
PGSC0003DMT400033530	Potato	cytosol	89.14	89.27
VIT_07s0104g00020.t01	Wine grape	cytosol	76.16	76.6
Os05t0398100-01	Rice	cytosol	22.85	72.32
HORVU1Hr1G062160.1	Barley	cytosol	73.06	71.94
GSMUA_Achr9P17600_001	Banana	cytosol	74.89	71.37
TraesCS1A01G249400.1	Wheat	cytosol	73.34	71.04
TraesCS1B01G260100.1	Wheat	cytosol	73.34	70.08
TraesCS1D01G248900.1	Wheat	cytosol	73.2	69.95
EES19490	Sorghum	nucleus	73.2	69.66
PGSC0003DMT400051857	Potato	endoplasmic reticulum	17.21	66.67
Zm00001d038134_P001	Maize	cytosol	72.36	64.53
Zm00001d010341_P002	Maize	cytosol	69.39	64.15
GSMUA_Achr10P...	Banana	endoplasmic reticulum	34.84	63.33
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	21.16	60.48
GSMUA_Achr10P...	Banana	cytosol	14.67	60.12
GSMUA_Achr10P...	Banana	cytosol	16.64	59.0
GSMUA_Achr2P00090_001	Banana	cytosol	15.23	57.75
GSMUA_Achr2P00100_001	Banana	cytosol	14.1	53.76
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	13.96	49.01
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	27.22	44.47

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210
InterPro:IPR000225	InterPro:IPR011989	UniProt:M1BSC5	PFAM:PF00514	PFAM:PF00651	EnsemblPlantsGene:PGSC0003DMG401020126
PGSC:PGSC0003DMG401020126	EnsemblPlants:PGSC0003DMT400051860	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164
InterPro:SKP1/BTB/POZ_sf	SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695	UniParc:UPI000296CEB8
SEG:seg	:	:	:	:	:

Description

Armadillo/beta-catenin repeat family protein [Source:PGSC_GENE;Acc:PGSC0003DMG401020126]

Coordinates

chr6:+:59078775..59101491

Molecular Weight (calculated)

78103.0 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.110

Length

709 amino acids

Sequence
(BLAST)

001: MENQAKRSKQ SSSSGRRSLK RKLEGDFEDD RKVSSPFSHD DDDAHQDLAP EVRTQVEILE STFSSTEADR ASAKRAIHVL SELAKNEEIV NVVVDCGAVP
101: ALVKHLQVPS LGSEGDGGQM PYEHEVEKGS AFTLGLLAIK PEHQQLIVDA EALPHLVDLL KRHKTAQNSR AVNGVIRRAA DAITNLAHEN SSIKTRVRIE
201: GGIPPLVELL EFVDAKVQRA AAGALRTLAF KNDENKNQIV ECNALPTLIL MLRSEDTAIH YEAVGVIGNL VHSSPNIKKD VLLAGALQPV IGLLSSSCPE
301: SQREAALLLG QFAATDSDCK IHIVQRGAVP PLIEMLQSLD AQLREMSAFA LGRLAQDTHN QAGIAHCGGI VPLLKLLDSK NGSLQHNAAF ALYGLADNED
401: NVTDLVKVGG VQKLQDGEFI VQPTRDCVAK TLKRLEEKIH GRVLGHLLYL MRVGEKVIQR RVALVLAHLC SPDDQKMIFI DNGGLELLLE LLVSTNLKHQ
501: RDGSVALCKL ANKASSLSPV DAAPPSPTPQ VYLGEQYVNN STLSDVTFLV EGKRFYAHRI CLLASSDAFR AMFDGGYRER DAKDIEIPNI PWNVFELMMR
601: YIYTGSVDVN MDVAQDLLRA ADQYLLEGLK RLCEYAIAQD ISVENVSLMF ELSEAFNALS LRNACIVFTL EKFDKLSVMP WYSQLIQRLI PETRAYFVRV
701: LSRPIQADL

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.