Factsheet for GSMUA_AchrUn_randomP29270_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 1
cytosol 1
extracellular 2
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P17940_001
GSMUA_Achr7P18000_001
GSMUA_Achr8P03390_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31340_001
GSMUA_Achr9P25190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G26830.1	15659098
AT5G13060.1	GSMUA_Achr7P18000_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr8P16990_001	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_AchrUn_...	AT1G69670.1	15659098
AT5G13060.1	GSMUA_Achr10P...	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P03390_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr9P25190_001	AT2G31270.1	18818695
AT5G13060.1	GSMUA_Achr8P31340_001	AT4G14700.1	18818695
AT5G13060.1	GSMUA_Achr2P17940_001	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	52.48	61.27
GSMUA_Achr2P00100_001	Banana	cytosol	43.07	46.77
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	42.57	34.68
GSMUA_Achr10P...	Banana	endoplasmic reticulum	47.52	24.62
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	52.48	24.42
CDY51336	Canola	mitochondrion	26.24	22.65
GSMUA_Achr10P...	Banana	cytosol	18.81	19.0
GSMUA_Achr2P00090_001	Banana	cytosol	15.35	16.58
CDY15719	Canola	plastid	11.39	16.55
VIT_05s0020g03020.t01	Wine grape	cytosol	53.96	15.29
GSMUA_Achr9P17600_001	Banana	cytosol	54.95	14.92
KRH77872	Soybean	cytosol	51.49	14.73
KRH35552	Soybean	cytosol	51.49	14.71
KRG91259	Soybean	cytosol	51.49	14.71
KRH27617	Soybean	cytosol	50.99	14.55
CDX92539	Canola	cytosol	49.51	14.27
PGSC0003DMT400033530	Potato	cytosol	49.01	13.98
Solyc09g065210.2.1	Tomato	cytosol	49.01	13.98
PGSC0003DMT400051860	Potato	cytosol	49.01	13.96
AT5G19330.1	Thale cress	cytosol	49.01	13.94
VIT_07s0104g00020.t01	Wine grape	cytosol	48.51	13.9
Bra002228.1-P	Field mustard	nucleus	49.51	13.81
Solyc06g084250.2.1	Tomato	cytosol	48.02	13.76
Bra006500.1-P	Field mustard	cytosol, nucleus, plastid	47.03	13.29
CDX88895	Canola	cytosol, nucleus, plastid	47.03	13.29
Bra030036.1-P	Field mustard	plastid	10.89	12.22
Bra023389.1-P	Field mustard	plastid	39.11	12.14
KRH67208	Soybean	cytosol	39.11	11.21
CDX69674	Canola	cytosol	39.11	11.17
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	40.59	11.13
KRG95533	Soybean	cytosol	39.11	11.08
CDX85673	Canola	plastid	40.1	11.05
Bra008860.1-P	Field mustard	plastid	38.61	11.03
CDX97221	Canola	cytosol, mitochondrion	38.12	10.89
CDX91149	Canola	cytosol, mitochondrion	39.11	10.84
GSMUA_Achr2P00150_001	Banana	cytosol, extracellular, plastid	2.48	7.94
CDY13990	Canola	nucleus	49.51	7.91
GSMUA_Achr10P...	Banana	cytosol	2.97	7.23
GSMUA_Achr10P...	Banana	extracellular	3.47	6.73
GSMUA_Achr2P00070_001	Banana	extracellular	4.46	5.88
PGSC0003DMT400051857	Potato	endoplasmic reticulum	4.46	4.92
GSMUA_Achr2P00050_001	Banana	extracellular, plasma membrane	2.97	4.14
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	3.47	2.5
CDX70871	Canola	cytosol	2.48	1.87
GSMUA_Achr10P...	Banana	cytosol	0.5	1.06

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP29270_001	EnsemblPlants:GSMUA_AchrUn_randomT29270_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG29270_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR23315	PANTHER:PTHR23315:SF164	SEG:seg
SUPFAM:SSF48371	UniParc:UPI000294C750	UniProt:M0UDD4	MapMan:35.1	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG29270_001]

Coordinates

chrchrUn_random:+:141120604..141121993

Molecular Weight (calculated)

22606.7 Da

IEP (calculated)

8.569

GRAVY (calculated)

0.208

Length

202 amino acids

Sequence
(BLAST)

001: LLYFINLKFQ FGDYWNTILN KQSSSHMSSF PSVFFIPMIY IHVPGFCFFG LGSHSSLPCL NCSILDSHNQ AGIVYNGGLV PLRKLLDSKN GCLQHNAAFA
101: LYGIAENEDN VSDFIKVGGV QKLQDGEFII QATKDCVAKT MKRLEEKING RVLNHLLYLM RVGEKAVQRR IALALAFEGC PKAHVLVCSN LLRSVICSYH
201: LF

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.