Factsheet for Solyc06g084250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006140.2.1
Solyc01g010820.2.1
Solyc03g006420.2.1
Solyc06g008510.2.1
Solyc12g013880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13060.1	Solyc01g010820.2.1	AT1G26830.1	15659098
AT5G13060.1	Solyc01g010820.2.1	AT1G69670.1	15659098
AT5G13060.1	Solyc01g006140.2.1	AT2G31270.1	18818695
AT5G13060.1	Solyc06g008510.2.1	AT2G31270.1	18818695
AT5G13060.1	Solyc03g006420.2.1	AT4G14700.1	18818695
AT5G13060.1	Solyc12g013880.1.1	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051860	Potato	cytosol	96.88	96.33
Solyc09g065210.2.1	Tomato	cytosol	87.94	87.57
VIT_07s0104g00020.t01	Wine grape	cytosol	76.17	76.17
HORVU1Hr1G062160.1	Barley	cytosol	72.2	70.69
GSMUA_Achr9P17600_001	Banana	cytosol	74.33	70.43
TraesCS1A01G249400.1	Wheat	cytosol	72.62	69.95
Os05t0398100-01	Rice	cytosol	22.13	69.64
TraesCS1B01G260100.1	Wheat	cytosol	72.62	69.0
TraesCS1D01G248900.1	Wheat	cytosol	72.48	68.87
EES19490	Sorghum	nucleus	72.48	68.59
Zm00001d038134_P001	Maize	cytosol	71.63	63.52
Zm00001d010341_P002	Maize	cytosol	68.79	63.23
GSMUA_Achr10P...	Banana	endoplasmic reticulum	34.33	62.05
KRG95533	Soybean	cytosol	61.28	60.59
KRH67208	Soybean	cytosol	60.28	60.28
GSMUA_Achr2P00160_001	Banana	cytosol, extracellular	20.85	59.27
GSMUA_Achr10P...	Banana	cytosol	14.47	58.96
GSMUA_Achr10P...	Banana	cytosol	16.45	58.0
GSMUA_Achr2P00090_001	Banana	cytosol	15.04	56.68
CDX70871	Canola	cytosol	20.99	55.43
CDX69674	Canola	cytosol	55.32	55.16
CDX97221	Canola	cytosol, mitochondrion	54.75	54.6
AT5G13060.1	Thale cress	cytosol, mitochondrion, plastid	55.32	52.92
CDX85673	Canola	plastid	54.89	52.8
GSMUA_Achr2P00100_001	Banana	cytosol	13.9	52.69
CDX91149	Canola	cytosol, mitochondrion	54.47	52.67
Bra008860.1-P	Field mustard	plastid	52.48	52.33
Bra023389.1-P	Field mustard	plastid	45.96	49.77
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	13.76	48.02
CDY51336	Canola	mitochondrion	14.89	44.87
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	26.81	43.55
CDY15719	Canola	plastid	7.52	38.13
Bra030036.1-P	Field mustard	plastid	9.22	36.11

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.710.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	InterPro:IPR000210	InterPro:IPR000225	InterPro:IPR011989
UniProt:K4CAT0	PFAM:PF00514	PFAM:PF00651	PFscan:PS50097	PFscan:PS50176	PANTHER:PTHR23315
PANTHER:PTHR23315:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00185	SMART:SM00225	SUPFAM:SSF48371	SUPFAM:SSF54695
EnsemblPlantsGene:Solyc06g084250.2	EnsemblPlants:Solyc06g084250.2.1	UniParc:UPI000276B9B8	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:49448918..49456453

Molecular Weight (calculated)

77469.5 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.063

Length

705 amino acids

Sequence
(BLAST)

001: MENQAKRSKQ SSSSGRRSLK RKLEGDFEDD RKVSSHDDDA HQDLASEVRT QVEILDSTFS STEADRASAK TAIHVLCELA KNEEIVNVVV DCGAVPALVK
101: HLQVPSLGNQ GDGGQMPYEH EVEKGSAFTL GLLAIKPEHQ QLIVDAGALP HLVDLLKRHK TLQNSRAVNG VIRRAADAIT NLAHENSSIK TRVRIVGGIP
201: PLVELLEFVD AKVQRAAAGA LRTLAFKNDE NKNQIVECNA LPTLILMLRS EDTAIHYEAV GVIGNLVHSS PNIKKDVLLA GALQPVIGLL SSSCPESQRE
301: AALLLGQFAA TDSDCKIHIV QRGAVPPLIE MLQSLDAQLR EMSAFALGRL AQDTHNQAGI AHCGGIVPLL KLLESKNGSL QHNAAFALYG LADNEDNVTD
401: LVKVGGVQKL QDGEFIVQPT RDCVAKTLKR LEEKIHGRVL GHLLYLMHVG EKVIQRRVAL VLAHLCSPDD QKMIFIDNGG LELLLELLES TNLKHQRDGS
501: VALCKLANKA SSLSPVDAAP PSPTPQVYLG ELYVNNSTLS DVTFLVEGKR FYAHRICLLA SSDAFRAMFD GGYRERDAKD IEIPNIPWDV FELMMRYIYT
601: GSVDVNMGVA KDLLRVADQY LLEGLKRLCE YAIAQDISVE NVSLMFELSE AFNALSLRNA CIVFTLEKFD KLSVMPWYSQ LIQLILPETR AYFARVLSRP
701: IQADL

Best Arabidopsis Sequence Match ( AT5G19330.1 )
(BLAST)

001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNEDLVNV IVDGGAVPAL
101: MTHLQAPPYN DGDLAEKPYE HEVEKGSAFA LGLLAIKPEY QKLIVDKGAL PHLVNLLKRN KDGSSSRAVN SVIRRAADAI TNLAHENSSI KTRVRVEGGI
201: PPLVELLEFS DSKVQRAAAG ALRTLAFKND DNKNQIVECN ALPTLILMLG SEDAAIHYEA VGVIGNLVHS SPHIKKEVLT AGALQPVIGL LSSCCPESQR
301: EAALLLGQFA STDSDCKVHI VQRGAVRPLI EMLQSPDVQL KEMSAFALGR LAQDAHNQAG IAHSGGLGPL LKLLDSRNGS LQHNAAFALY GLADNEDNVS
401: DFIRVGGIQK LQDGEFIVQA TKDCVSKTLK RLEEKIHGRV LRHLLYLMRI SEKSIQRRVA LALAHLCSPE DQRTIFIDDN GLELLLGLLG SLNTKQQLDG
501: AAALYKLANK SMALSPVDAA PPSPTQRVYL GEQYVNNATL SDVTFLVEGR TFYAHRICLL ASSDAFRAMF DGGYREKDAR DIEIPNIKWE VFELMMRFIY
601: TGSVDITNEI SKDLLRAADQ YLLEGLKRLC EYTIAQDITL ESIGDMYELS EAFHAMSLRQ ACIMFILEHF DKLSSMPWQN ELVQRTIPEI REYFCRALTK
701: STTNLQSLRL

Arabidopsis Description

ARIAARM REPEAT PROTEIN INTERACTING WITH ABF2 [Source:UniProtKB/Swiss-Prot;Acc:B9DHT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.