Factsheet for Solyc03g006420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006140.2.1
Solyc01g097050.2.1
Solyc04g081580.2.1
Solyc05g007450.2.1
Solyc06g008510.2.1
Solyc06g073510.2.1
Solyc06g084250.2.1
Solyc09g065210.2.1
Solyc12g013880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	Solyc05g007450.2.1	AT1G26840.1	16179646
AT4G12620.1	Solyc06g073510.2.1	AT2G37560.1	16179646
AT4G12620.1	Solyc06g084250.2.1	AT5G13060.1	18818695
AT4G12620.1	Solyc09g065210.2.1	AT5G13060.1	18818695
AT4G14700.1	Solyc01g097050.2.1	AT3G04620.1	20706207
AT4G14700.1	Solyc01g006140.2.1	AT3G54710.1	18818695
AT4G14700.1	Solyc06g008510.2.1	AT3G54710.1	18818695
AT4G14700.1	Solyc04g081580.2.1	AT4G16630.1	20706207
AT4G14700.1	Solyc06g084250.2.1	AT5G13060.1	18818695
AT4G14700.1	Solyc09g065210.2.1	AT5G13060.1	18818695
AT4G14700.1	Solyc12g013880.1.1	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033353	Potato	nucleus, plastid	84.6	93.98
VIT_06s0004g00530.t01	Wine grape	cytosol	56.68	72.91
KRH23133	Soybean	nucleus	66.55	64.98
VIT_06s0004g02050.t01	Wine grape	nucleus	70.16	64.21
AT4G14700.1	Thale cress	plastid	62.33	64.03
KRH10202	Soybean	nucleus	65.46	63.7
CDY16697	Canola	plastid	61.97	63.66
GSMUA_Achr8P31340_001	Banana	nucleus	61.25	63.62
CDY62377	Canola	plastid	61.73	62.87
Bra029471.1-P	Field mustard	plastid	61.49	62.85
AT4G12620.1	Thale cress	plastid	60.41	61.75
OQU75979	Sorghum	plastid	59.81	61.36
Zm00001d045080_P001	Maize	plastid	58.12	59.05
TraesCS7A01G151700.1	Wheat	plastid	55.11	58.49
TraesCS7D01G153500.1	Wheat	plastid	58.0	58.14
Zm00001d037086_P006	Maize	nucleus, plastid	58.24	54.69
TraesCS7B01G055600.1	Wheat	nucleus	58.12	54.51
VIT_13s0175g00030.t01	Wine grape	extracellular	9.99	52.87
HORVU7Hr1G031190.2	Barley	nucleus	58.12	51.06
HORVU3Hr1G033880.2	Barley	plastid	10.95	35.0
Solyc06g076860.2.1	Tomato	nucleus	13.0	20.3

Protein Annotations

Gene3D:1.10.8.1280	MapMan:13.2.1.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:BAH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005524
GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	UniProt:K4BE65	InterPro:ORC1
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016
PFscan:PS51038	PANTHER:PTHR10763	PANTHER:PTHR10763:SF23	SMART:SM00249	SMART:SM00382	SMART:SM00439
SUPFAM:SSF52540	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc03g006420.2	EnsemblPlants:Solyc03g006420.2.1	UniParc:UPI00027679B1	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:1013878..1021515

Molecular Weight (calculated)

93897.3 Da

IEP (calculated)

8.654

GRAVY (calculated)

-0.484

Length

831 amino acids

Sequence
(BLAST)

001: MDFGESTPKK KSKQSPNATP IKQQNPLPIS SLSPSDPIFP KTPQTLNPTN CRRSVRLRAT PRTPAPEPLS PPTSARRGKS LNFTTKNGTN SAKRKKSKVA
101: ALTPILTPGL TESKRKRKSV ERKNVGVVKR SVSRSCKKRV YYKKVVFDGG EFGVGDDVYV KRREDAGSDN EDPEVEECRI CYKPAGRVIM IECDECLGGF
201: HLKCLKPPLK EVPEGDWICM YCEAKKLGKI MEMPAPPKGK KRVRTAKEKL LDSDLWAARI ESIWKEVDGT YWFRAHWYII PEETDAGRQP HNLRRELYRT
301: NDFADVEMES VIRHCFVLYP KEFEKARNDG DDVFLCEYEY DIHWHSFKRI SEIEDNAVDD DEAENDGDWN SCEDQDSDGE DDVEYEREKL SNLLTRPSAA
401: HPLAANSRKG RFFGLQKIGV KKIPEHVRSH KLTELEKAKG TLLLATLPKS LPCRTKEMEE ITTFVKGAIC DDQCLGRCLY IHGVPGTGKT MSVLAVMRSL
501: RCEVDAGSIK PYCFVEINGL KLASPENIYS VIYEALNGHK VGWKKALHSL NERFSNVAER SKEENRPCIL LIDELDLLVT RNQAVLYNIL DWPTKPHSKL
601: IVIGIANTMD LPEKLLPRIS SRMGIQRLCF GPYNYQQLQE IILTRLNGIE AFEKPAIEFA SRKVAAVSGD ARRALEICRR AAELADYRVK KLLPIPDSAA
701: PGKMLVRMAD VEAAIQEMFQ APHIQVMRSS SKLSKIFLAA MVYEGHKTGM SETTFDQLAT TVSCLCTSNG EKFPGWDMLL KVGCKLGECR IILCEPGVKH
801: KLQKLQLNFP SDDVSFALKD SKELSWLARY L

Best Arabidopsis Sequence Match ( AT4G14700.1 )
(BLAST)

001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL

Arabidopsis Description

ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.