CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89201
EER92739
EER93232
EER95875
EER99752
EES16387
EES17034
EES17403
EES19490
KXG35997
KXG37409
OQU89064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	EER99752	AT1G26840.1	16179646
AT4G12620.1	EER92739	AT2G37560.1	16179646
AT4G12620.1	EER93232	AT2G37560.1	16179646
AT4G12620.1	EES19490	AT5G13060.1	18818695
AT4G14700.1	EER95875	AT1G30210.1	18818695
AT4G14700.1	EES16387	AT1G30210.1	18818695
AT4G14700.1	KXG37409	AT1G30210.1	18818695
AT4G14700.1	OQU89064	AT1G30210.1	18818695
AT4G14700.1	EES17034	AT3G04620.1	20706207
AT4G14700.1	EER89201	AT3G54710.1	18818695
AT4G14700.1	KXG35997	AT4G16630.1	20706207
AT4G14700.1	EES19490	AT5G13060.1	18818695
AT4G14700.1	EES17403	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045080_P001	Maize	plastid	92.72	91.81
TraesCS7A01G151700.1	Wheat	plastid	78.77	81.48
TraesCS7D01G153500.1	Wheat	plastid	82.84	80.94
Zm00001d037086_P006	Maize	nucleus, plastid	88.27	80.79
TraesCS7B01G055600.1	Wheat	nucleus	83.09	75.96
HORVU7Hr1G031190.2	Barley	nucleus	82.47	70.61
GSMUA_Achr8P31340_001	Banana	nucleus	63.46	64.25
VIT_06s0004g00530.t01	Wine grape	cytosol	50.99	63.93
PGSC0003DMT400033355	Potato	cytosol	6.91	61.54
KRH23133	Soybean	nucleus	62.96	59.93
Solyc03g006420.2.1	Tomato	nucleus	61.36	59.81
PGSC0003DMT400033353	Potato	nucleus, plastid	54.44	58.96
KRH10202	Soybean	nucleus	61.23	58.08
AT4G14700.1	Thale cress	plastid	57.53	57.6
CDY16697	Canola	plastid	56.17	56.24
AT4G12620.1	Thale cress	plastid	56.3	56.09
CDY62377	Canola	plastid	56.42	56.0
Bra029471.1-P	Field mustard	plastid	56.17	55.97
VIT_06s0004g02050.t01	Wine grape	nucleus	61.11	54.52
VIT_13s0175g00030.t01	Wine grape	extracellular	8.52	43.95
EES01777	Sorghum	plastid	14.2	23.37

Protein Annotations

Gene3D:1.10.8.1280	MapMan:13.2.1.1.1	Gene3D:3.30.40.10	Gene3D:3.40.50.300	EntrezGene:8065432	UniProt:A0A1W0VRS2
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:BAH_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005524	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787
EnsemblPlants:OQU75979	ProteinID:OQU75979	ProteinID:OQU75979.1	InterPro:ORC1	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR10763
PANTHER:PTHR10763:SF23	SMART:SM00249	SMART:SM00382	SMART:SM00439	EnsemblPlantsGene:SORBI_3010G067900	SUPFAM:SSF52540
SUPFAM:SSF57903	UniParc:UPI0001A89201	RefSeq:XP_002436617.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:5448629..5455281

Molecular Weight (calculated)

91498.4 Da

IEP (calculated)

8.454

GRAVY (calculated)

-0.574

Length

810 amino acids

Sequence
(BLAST)

001: MDLAATPSRS KSKPRSSPAK PAAAAAKSRM DLCTPSKPTP RRKSKSTASP APMSPATPST IRRSRRLLET PTKAALEVQV KATPTPTSKA KRAAPSPKTP
101: AQREPKRQKR HPRKRAYYRK VVYDGGEFEV GDDVYVKRRE AAESDGEDPE VEECRVCFRT GGGVMVECDA CLGGFHLRCV RPPLRRVPEG DWACPYCEAE
201: RAGKLVERPR PPEGKRIVRT SKEKLLSGDL WAARIESLWR EPDGTFWAKI RWYIIPEETA AGRQPHNLRR ELYRTNDLGD IEMETILRHC SVMSPKDFRD
301: ANDGGDDVFY CEYEYDIHWH NFKRLADIDD ELETKEDPND EPYNAGDDYN SDSDEDSEYD EEEEPTSSFS ARRNQSHELA ANSRKGRIYG LQKIGIRKIP
401: EHVRCHQKTE LEKAKATLLL ATLPKSLPCR DKEMEEISIF VKDAICNDQC LGRCLYIHGV PGTGKTMSVL AVMRRLRSEF DSGTLRPYCF IEINGLKLAS
501: PENIYKVVYE QLSGHRVGWK KALHYLTEHF SGGTKIGKQA NQPIILLIDE LDLLLTRNQS VLYNILDWPT KPNSNLVVIG IANTMDLPEK LLPRISSRMG
601: IQRLCFGPYN YRQLQEIITS RLKGIDAFEE QAIEFASRKV AAMSGDARRA LEICRRAAEF ADYRVKQSRQ SAQSTVSANK GDGVVSMGDI EAAIQEVFQA
701: PHIQVMKNCP KFGKVILVAL VHELYKSGLG EIMFDKLATT VFSWCLANRE VVPGYDTLVK ICCKLGESKI ILCEEGSKHK LQKLQLNYPS DDVTFALKES
801: TDLPWISKYL

Best Arabidopsis Sequence Match ( AT4G14700.1 )
(BLAST)

001: MASSLSSKAK TFKSPTKTPT KMYRKSYLSP SSTSLTPPQT PETLTPLRRS SRHVSRKINL GNDPIDLPGK ESVEEINLIR KPRKRTNDIV VAEKSKKKKI
101: DPEVSFSPVS PIRSETKKTK KKKRVYYNKV EFDETEFEIG DDVYVKRTED ANPDEEEEED PEIEDCQICF KSHTNTIMIE CDDCLGGFHL NCLKPPLKEV
201: PEGDWICQFC EVKKSGQTLV VVPKPPEGKK LARTMKEKLL SSDLWAARIE KLWKEVDDGV YWIRARWYMI PEETVLGRQR HNLKRELYLT NDFADIEMEC
301: VLRHCFVKCP KEFSKASNDG DDVFLCEYEY DVHWGSFKRV AELADGDEDS DQEWNGRKEE EIDYSDEEIE FDDEESVRGV SKSKRGGANS RKGRFFGLEK
401: VGMKRIPEHV RCHKQSELEK AKATLLLATR PKSLPCRSKE MEEITAFIKG SISDDQCLGR CMYIHGVPGT GKTISVLSVM KNLKAEVEAG SVSPYCFVEI
501: NGLKLASPEN IYSVIYEGLS GHRVGWKKAL QSLNERFAEG KKIGKENEKP CILLIDELDV LVTRNQSVLY NILDWPTKPN SKLVVLGIAN TMDLPEKLLP
601: RISSRMGIQR LCFGPYNHRQ LQEIISTRLE GINAFEKTAI EFASRKVAAI SGDARRALEI CRRAAEVADY RLKKSNISAK SQLVIMADVE VAIQEMFQAP
701: HIQVMKSVSK LSRIFLTAMV HELYKTGMAE TSFDRVATTV SSICLTNGEA FPGWDILLKI GCDLGECRIV LCEPGEKHRL QKLQLNFPSD DVAFALKDNK
801: DLPWLANYL

Arabidopsis Description

ORC1AOrigin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.