CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92739
EER93232
EER99752
EES17403
OQU75979

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	EER99752	AT1G26840.1	16179646
AT1G26840.1	EER92739	AT2G37560.1	16179646
AT1G26840.1	EER93232	AT2G37560.1	16179646
AT1G26840.1	OQU75979	AT4G12620.1	16179646
AT1G26840.1	EES17403	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022226_P002	Maize	nucleus, plastid	95.22	95.22
Os07t0628600-00	Rice	nucleus, plastid	91.81	91.19
TraesCS2D01G163800.1	Wheat	nucleus, plastid	89.76	89.46
TraesCS2B01G183200.1	Wheat	nucleus, plastid	89.76	89.46
TraesCS2A01G157700.1	Wheat	nucleus, plastid	88.05	86.87
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	85.67	86.55
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	72.01	84.4
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	69.97	78.85
TraesCS5B01G221800.3	Wheat	nucleus	81.91	71.64
GSMUA_Achr11P...	Banana	nucleus	67.58	68.75
VIT_01s0026g02290.t01	Wine grape	nucleus	66.21	67.36
KRH70714	Soybean	nucleus	64.16	65.73
PGSC0003DMT400008733	Potato	nucleus	61.43	63.38
Solyc05g007450.2.1	Tomato	nucleus	61.43	63.38
KRH74848	Soybean	nucleus	61.77	63.29
CDY50731	Canola	nucleus	61.09	63.03
CDY45005	Canola	nucleus	60.75	62.68
CDY46436	Canola	cytosol, nucleus, plastid	60.41	62.32
CDY16197	Canola	nucleus	60.41	62.32
Bra024679.1-P	Field mustard	nucleus	58.7	62.09
AT1G26840.1	Thale cress	nucleus	60.07	61.97
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	60.07	61.97
CDY31509	Canola	extracellular	24.23	54.2

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	EntrezGene:8063513	UniProt:C5X367	EnsemblPlants:EER99752	ProteinID:EER99752
ProteinID:EER99752.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006270	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009555	GO:GO:0009987	InterPro:ORC6	InterPro:ORC6_met/pln	PFAM:PD315657
PFAM:PF05460	PANTHER:PTHR13394	EnsemblPlantsGene:SORBI_3002G385400	UniParc:UPI0001A83F99	RefSeq:XP_002463231.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:74006687..74009889

Molecular Weight (calculated)

32458.1 Da

IEP (calculated)

9.936

GRAVY (calculated)

-0.423

Length

293 amino acids

Sequence
(BLAST)

001: MDMSAIAARL GLSGSRPVIR KAGELRRLCD VNFNSSVLGI GEVCKAIICL EIAASKLQVI FDRAEAVRMS GMSEKAYIRS FNALQNGLGV KTTLDVRELG
101: IQFGCVRLIP FVQKGLSLYK ERFLAALPPS RRASTDFGRP VFTAAAFYLC AKRHKLKVDK LKLIDLCGTS SSEFTTVSTS MTDLCFDVFG IAKEKKDPKS
201: IKGNRELLDV LPSKRKHEDD SDSSGSDESS DDDQDELDLP THKRRKKMEK EAYNDWKSSV LSSNKKTKTD PAKPRRQAQL NFKKPAEVPS AAN

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.