CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05698
KRH10202
KRH15345
KRH23133
KRH23980
KRH70714
KRH74848

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	KRH70714	AT1G26840.1	16179646
AT1G26840.1	KRH74848	AT1G26840.1	16179646
AT1G26840.1	KRH05698	AT2G37560.1	16179646
AT1G26840.1	KRH15345	AT2G37560.1	16179646
AT1G26840.1	KRH10202	AT4G12620.1	16179646
AT1G26840.1	KRH23133	AT4G12620.1	16179646
AT1G26840.1	KRH23980	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70714	Soybean	nucleus	93.36	93.36
VIT_01s0026g02290.t01	Wine grape	nucleus	70.98	70.49
CDY50731	Canola	nucleus	65.03	65.49
Bra024679.1-P	Field mustard	nucleus	63.29	65.34
CDY16197	Canola	nucleus	64.34	64.79
PGSC0003DMT400008733	Potato	nucleus	63.64	64.08
AT1G26840.1	Thale cress	nucleus	62.94	63.38
CDY45005	Canola	nucleus	62.94	63.38
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	62.59	63.03
Solyc05g007450.2.1	Tomato	nucleus	62.59	63.03
CDY46436	Canola	cytosol, nucleus, plastid	62.24	62.68
Os07t0628600-00	Rice	nucleus, plastid	64.34	62.37
GSMUA_Achr11P...	Banana	nucleus	62.59	62.15
Zm00001d022226_P002	Maize	nucleus, plastid	63.64	62.12
EER99752	Sorghum	nucleus, plastid	63.29	61.77
TraesCS2B01G183200.1	Wheat	nucleus, plastid	62.94	61.22
TraesCS2D01G163800.1	Wheat	nucleus, plastid	62.94	61.22
TraesCS2A01G157700.1	Wheat	nucleus, plastid	63.29	60.94
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	61.19	60.34
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	53.5	58.85
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	51.4	58.8
CDY31509	Canola	extracellular	23.43	51.15
TraesCS5B01G221800.3	Wheat	nucleus	59.44	50.75

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100795599	MapMan:13.2.1.1.6	EMBL:ACUP02000080	EnsemblPlantsGene:GLYMA_01G046400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003688	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1J5Q0
EnsemblPlants:KRH74848	ProteinID:KRH74848	ProteinID:KRH74848.1	InterPro:ORC6	InterPro:ORC6_met/pln	PFAM:PD315657
PFAM:PF05460	PANTHER:PTHR13394	UniParc:UPI000233790D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:5353518..5356554

Molecular Weight (calculated)

31975.8 Da

IEP (calculated)

10.075

GRAVY (calculated)

-0.369

Length

286 amino acids

Sequence
(BLAST)

001: MDVSELAKKL GLSDSKLVVR KAAELRRLCE VQFDSSVIGV GEVAKSIICL EIAAMRLSIL FDRSSAARLS GMSERAYIRS YNSLHNGLGV KMKLDVRELA
101: IQFGCVRIIT LVRDGLKLYK DRFVSSLPAS RRASADFTRP VFTAVAFYLC AKKHKLKVDK LKLIELCGTS ESEFSSVSAT MKDLCHDVFG VAKEKKDPKQ
201: VQSNRDLLDV LPSKRKAEDG GYSSDDGPEL SSYKKAKKME KRDFEKWKSS VLASNEQNKK APCKRTRQTS LNFLNKASDN QELEAM

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.