Factsheet for Zm00001d022226_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017423_P001
Zm00001d022226_P002
Zm00001d031073_P001
Zm00001d037086_P006
Zm00001d045080_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	Zm00001d022226_P002	AT1G26840.1	16179646
AT1G26840.1	Zm00001d017423_P001	AT2G37560.1	16179646
AT1G26840.1	Zm00001d037086_P006	AT4G12620.1	16179646
AT1G26840.1	Zm00001d045080_P001	AT4G12620.1	16179646
AT1G26840.1	Zm00001d031073_P001	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99752	Sorghum	nucleus, plastid	95.22	95.22
Os07t0628600-00	Rice	nucleus, plastid	89.42	88.81
TraesCS2D01G163800.1	Wheat	nucleus, plastid	87.37	87.07
TraesCS2B01G183200.1	Wheat	nucleus, plastid	87.37	87.07
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	83.96	84.83
TraesCS2A01G157700.1	Wheat	nucleus, plastid	85.67	84.51
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	69.62	81.6
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	68.26	76.92
TraesCS5B01G221800.3	Wheat	nucleus	78.84	68.96
VIT_01s0026g02290.t01	Wine grape	nucleus	65.87	67.01
GSMUA_Achr11P...	Banana	nucleus	65.19	66.32
KRH70714	Soybean	nucleus	64.51	66.08
PGSC0003DMT400008733	Potato	nucleus	62.46	64.44
Solyc05g007450.2.1	Tomato	nucleus	62.46	64.44
KRH74848	Soybean	nucleus	62.12	63.64
CDY50731	Canola	nucleus	61.43	63.38
CDY45005	Canola	nucleus	61.09	63.03
CDY46436	Canola	cytosol, nucleus, plastid	60.75	62.68
CDY16197	Canola	nucleus	60.75	62.68
Bra024679.1-P	Field mustard	nucleus	59.04	62.45
AT1G26840.1	Thale cress	nucleus	60.41	62.32
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	60.41	62.32
CDY31509	Canola	extracellular	23.21	51.91

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	UniProt:A0A1D6IKG9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009555	GO:GO:0009987	ProteinID:ONM59899.1	InterPro:ORC6	InterPro:ORC6_met/pln
PFAM:PD315657	PFAM:PF05460	PANTHER:PTHR13394	UniParc:UPI0002209ADB	EnsemblPlantsGene:Zm00001d022226	EnsemblPlants:Zm00001d022226_P002
EnsemblPlants:Zm00001d022226_T002	SEG:seg	:	:	:	:

Description

Origin recognition complex subunit 6

Coordinates

chr7:-:173089455..173092796

Molecular Weight (calculated)

32434.1 Da

IEP (calculated)

10.040

GRAVY (calculated)

-0.420

Length

293 amino acids

Sequence
(BLAST)

001: MDMSSIAANL GLSGSRPVIR KAGELRRLCD VNFDSSVLGI GEVCKAIICL EIAASKLQVI FDRAEAVRMS GMSEKAYIRS FNSLQNGLGV KTTLDVRELG
101: IQFGCVRLIP FVQKGLSLYK ERFLAALPPS RRASTDFGRP VFTAAAFYLC ARRHKLKVDK LKLIDLCGTS SAEFTTVSTS MTDLCFDVFG IAKEKKDPKS
201: IKGNRELLDV LPSKRKHEDG GDSSASDESS DNDQDELDLP THKRRKKMER EAYKDWKSSV LSSNKKTKPD PAKPRRQAQL NFKKPAEVPP AAN

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.