Factsheet for Bra024679.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005184.1-P
Bra008604.1-P
Bra016292.1-P
Bra024679.1-P
Bra029471.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	Bra016292.1-P	AT1G26840.1	16179646
AT1G26840.1	Bra024679.1-P	AT1G26840.1	16179646
AT1G26840.1	Bra005184.1-P	AT2G37560.1	16179646
AT1G26840.1	Bra029471.1-P	AT4G12620.1	16179646
AT1G26840.1	Bra008604.1-P	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16197	Canola	nucleus	97.83	95.42
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	90.61	88.38
AT1G26840.1	Thale cress	nucleus	88.09	85.92
PGSC0003DMT400008733	Potato	nucleus	68.95	67.25
Solyc05g007450.2.1	Tomato	nucleus	68.59	66.9
VIT_01s0026g02290.t01	Wine grape	nucleus	66.79	64.24
KRH70714	Soybean	nucleus	65.7	63.64
KRH74848	Soybean	nucleus	65.34	63.29
Os07t0628600-00	Rice	nucleus, plastid	63.54	59.66
Zm00001d022226_P002	Maize	nucleus, plastid	62.45	59.04
EER99752	Sorghum	nucleus, plastid	62.09	58.7
GSMUA_Achr11P...	Banana	nucleus	60.65	58.33
TraesCS2B01G183200.1	Wheat	nucleus, plastid	60.65	57.14
TraesCS2D01G163800.1	Wheat	nucleus, plastid	60.65	57.14
TraesCS2A01G157700.1	Wheat	nucleus, plastid	60.65	56.57
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	53.07	56.54
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	58.48	55.86
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	49.46	54.8
TraesCS5B01G221800.3	Wheat	nucleus	56.32	46.57

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	EnsemblPlantsGene:Bra024679	EnsemblPlants:Bra024679.1	EnsemblPlants:Bra024679.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:M4E7C4	InterPro:ORC6	InterPro:ORC6_met/pln
PFAM:PD315657	PFAM:PF05460	PANTHER:PTHR13394	UniParc:UPI000254281F	SEG:seg	:

Description

AT1G26840 (E=5e-128) ORC6, ATORC6 | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6); DNA binding

Coordinates

chrA09:+:23549866..23551560

Molecular Weight (calculated)

30985.6 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.326

Length

277 amino acids

Sequence
(BLAST)

001: MDISDIARKL DLSNNKLVVR KAAEIRRLCD AQFDSSVIGV GEICKAVICL EMAASRQAAI KLSGMSEKAY TRSFNSLQNV IGVKIKLNVK ELAIQFGCVR
101: IIKSVQNMLS LYKERFLASL PASRRANADF TRPVFTAAAF YLCAKKQKLK VDKLRLVEVC GTSESEFSCV STSMIDLCFD CVGVSKEKKD AKDVKGNREL
201: LDVLPEKRKL EDGGYSSDDE SSCYKRHKKM EEAKYEDWKT TVVHSIKKNP EKGPKKVIQT SLNFTKKAAT EEVQVDS

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.