Factsheet for Bra008604.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005184.1-P
Bra016292.1-P
Bra024679.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16690.1	Bra016292.1-P	AT1G26840.1	16179646
AT5G16690.1	Bra024679.1-P	AT1G26840.1	16179646
AT5G16690.1	Bra005184.1-P	AT2G37560.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69432	Canola	nucleus	98.22	90.82
CDY49642	Canola	nucleus	96.59	83.27
AT5G16690.1	Thale cress	nucleus	85.33	78.47
VIT_16s0039g01440.t01	Wine grape	cytosol	19.7	54.51
PGSC0003DMT400039753	Potato	cytosol	24.44	45.71
KRH23980	Soybean	plastid	49.63	45.52
Solyc12g013880.1.1	Tomato	nucleus	43.56	44.41
VIT_16s0039g01430.t01	Wine grape	nucleus	24.15	43.94
PGSC0003DMT400039751	Potato	nucleus	21.19	43.47
GSMUA_Achr2P17940_001	Banana	nucleus	39.7	42.2
TraesCS7B01G120800.1	Wheat	plastid	44.44	41.67
TraesCS7A01G213600.1	Wheat	plastid	44.3	41.59
HORVU2Hr1G029330.11	Barley	plastid	44.15	41.39
EES17403	Sorghum	plastid	43.85	41.34
TraesCS7D01G215600.1	Wheat	plastid	43.85	41.11
Os10t0402200-01	Rice	nucleus, plastid	43.41	40.81
Zm00001d031073_P001	Maize	plastid	18.22	40.33

Protein Annotations

MapMan:13.2.1.1.3	EnsemblPlantsGene:Bra008604	EnsemblPlants:Bra008604.1	EnsemblPlants:Bra008604.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009744	GO:GO:0009791	GO:GO:0009987
GO:GO:0048527	UniProt:M4CWK7	InterPro:ORC3	PFAM:PF07034	PANTHER:PTHR12748	UniParc:UPI0002544884
SEG:seg	:	:	:	:	:

Description

AT5G16690 (E=1e-174) ORC3, ATORC3 | ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3); protein binding

Coordinates

chrA10:-:13024388..13029384

Molecular Weight (calculated)

75488.0 Da

IEP (calculated)

8.522

GRAVY (calculated)

-0.186

Length

675 amino acids

Sequence
(BLAST)

001: MAPSTTVVDP PPSSTTDSFN SNAAAAENDI RPFFVLHKAS SGSKSTATVK AKRRIESPSP KLAKKSEIES VEEEDGQFFS TLRLRVFETV WSKIENTIQD
101: VLRDSNSKVF SGVHDWICES FESVRSSGAL SLSEAVRSYP VLSQPSSKQL FTALVLTRNL EMVDDLVTFE DLGLHLKSQG CHVAKLSSMD FSAKNGVGGC
201: LRGLLRQFVM PTIDVADVTI LASWYRENGN QKNPVVIIVD DTERCSAPVL SELILILSEW AVKVPVFLIM GVSTAHDAPR KILSANALQR LCATRFTLSS
301: PAERMDAVLE AVFLKPCSGF TVSHKVALCM RSYFLCQDGT LTSFVKTLKI ACLQHFSLEP LSIMLEHFCQ DNQCIYEAGK FDKLRLLDIF CETLDPEARY
401: LKYFSPSAIL NSQSHVSGRN SVIRRVLRKL RDLSPAQLTS LLKSWESLTA EFSEINEKVM ELHPFMRNVE AAGQRPGLPT SPKKHASRSH SKLEKELKAM
501: TDKISAVIEF MLREYMKPVE TVPFNEILCF KNVDKLQSAL LGDPRGRIQS DLLESHSILN CSCCSQRGTT LLPSMHDTSI LYTLAQEHAD VINLHDWYQS
601: FKTILIPRNS KAKSKSKTTS KSKKRKERCE EPEPPAEASI QARFCRAVME LQIAGLIRMP SKRRPDFVQR VAFSS

Best Arabidopsis Sequence Match ( AT5G16690.1 )
(BLAST)

001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS

Arabidopsis Description

ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.