Factsheet for Solyc12g013880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g007450.2.1
Solyc06g073510.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16690.1	Solyc05g007450.2.1	AT1G26840.1	16179646
AT5G16690.1	Solyc06g073510.2.1	AT2G37560.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039751	Potato	nucleus	47.13	94.83
PGSC0003DMT400039753	Potato	cytosol	41.84	76.73
VIT_16s0039g01430.t01	Wine grape	nucleus	30.97	55.26
VIT_16s0039g01440.t01	Wine grape	cytosol	17.67	47.95
GSMUA_Achr2P17940_001	Banana	nucleus	45.32	47.24
KRH23980	Soybean	plastid	49.09	44.16
Bra008604.1-P	Field mustard	nucleus	44.41	43.56
AT5G16690.1	Thale cress	nucleus	48.04	43.32
CDX69432	Canola	nucleus	46.98	42.6
TraesCS7B01G120800.1	Wheat	plastid	44.26	40.69
TraesCS7A01G213600.1	Wheat	plastid	44.11	40.61
HORVU2Hr1G029330.11	Barley	plastid	43.81	40.28
CDY49642	Canola	nucleus	47.43	40.1
TraesCS7D01G215600.1	Wheat	plastid	43.5	40.0
EES17403	Sorghum	plastid	42.3	39.11
Os10t0402200-01	Rice	nucleus, plastid	42.3	39.0
Zm00001d031073_P001	Maize	plastid	13.9	30.16

Protein Annotations

MapMan:13.2.1.1.3	GO:GO:0000784	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005656	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006267
GO:GO:0006270	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009744	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0031261	GO:GO:0048527
UniProt:K4DCS3	InterPro:ORC3	PFAM:PF07034	PANTHER:PTHR12748	EnsemblPlantsGene:Solyc12g013880.1	EnsemblPlants:Solyc12g013880.1.1
UniParc:UPI000276A4C2	SEG:seg	:	:	:	:

Description

Origin of replication complex subunit 3 [Source:Projected from Arabidopsis thaliana (AT5G16690) UniProtKB/Swiss-Prot;Acc:Q6E7H0]

Coordinates

chr12:-:4667669..4679426

Molecular Weight (calculated)

74351.8 Da

IEP (calculated)

8.151

GRAVY (calculated)

-0.188

Length

662 amino acids

Sequence
(BLAST)

001: MEAFRCVWSK IESKIKDVLR SINAGVFDEI GQWVRESFNE ICSCRGPVDP SKSSLPYPFV HNGGLVKKLF TGLVFTKNIE TVDDILTFAE LGLHLKSHGC
101: YVANISSFDF STKNGIGGCL RAFLRQLLMV DIEAADVSLL ASWYSDHGKY EKPVVVIIED MERCSGAILS DFINMLSEWS VKIPIILIAG VATSADAPRN
201: VLTSRALQYL STSIFSLKCP AERLDAIIET VLVKNCAGFS VGHKVATFLR NYFLRQDGTV SSFVRALKMA IVQQLSIEPL SFVLKLSVDE GDSKRSWHED
301: LANLPEELIK HSFELPSYKK YSVNRNNHVE LNATSLGHGL SEMQRLQELW RSCLMCLYEA GRYHKVALLD LYLEALDPEL YNSRLSNHGC DSAKDRSLLS
401: NNDKLFKLQK AEVTNQVIRK MRDLPAAKLS QLLKSWERFT EGSMEVHEKI MELQSQMVSE DVKGHKAELT DISKRHISRR GLNVEKDACT SNDKAATLAG
501: QMIRDSMQPI ECIPFHELIC FKDVDNLQSA LAGDPRRRIQ IDLLNFYKIL KCGCCSNSGG TLSPSMHETS IMYTLAQEHG DLINLHDWFQ SFKASLSSSG
601: NKGLKKLASP KKRKENPSSQ NNSDALLQAR FCRAVMELQI TGLLRMPSKR RPDCVQRVAF GV

Best Arabidopsis Sequence Match ( AT5G16690.1 )
(BLAST)

001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS

Arabidopsis Description

ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.