CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05698
KRH15345
KRH70714
KRH74848

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16690.1	KRH70714	AT1G26840.1	16179646
AT5G16690.1	KRH74848	AT1G26840.1	16179646
AT5G16690.1	KRH05698	AT2G37560.1	16179646
AT5G16690.1	KRH15345	AT2G37560.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01430.t01	Wine grape	nucleus	27.45	54.45
VIT_16s0039g01440.t01	Wine grape	cytosol	17.93	54.1
Bra008604.1-P	Field mustard	nucleus	45.52	49.63
Solyc12g013880.1.1	Tomato	nucleus	44.16	49.09
PGSC0003DMT400039753	Potato	cytosol	23.78	48.48
PGSC0003DMT400039751	Potato	nucleus	21.6	48.33
CDX69432	Canola	nucleus	47.55	47.95
GSMUA_Achr2P17940_001	Banana	nucleus	41.03	47.56
AT5G16690.1	Thale cress	nucleus	46.74	46.87
CDY49642	Canola	nucleus	48.1	45.21
TraesCS7D01G215600.1	Wheat	plastid	43.75	44.72
TraesCS7B01G120800.1	Wheat	plastid	43.61	44.58
TraesCS7A01G213600.1	Wheat	plastid	43.48	44.51
Os10t0402200-01	Rice	nucleus, plastid	43.07	44.15
EES17403	Sorghum	plastid	42.66	43.85
HORVU2Hr1G029330.11	Barley	plastid	42.66	43.61
Zm00001d031073_P001	Maize	plastid	15.22	36.72

Protein Annotations

EntrezGene:100780646	MapMan:13.2.1.1.3	EMBL:ACUP02007164	EnsemblPlantsGene:GLYMA_12G014600	GO:GO:0000784	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003688	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005656	GO:GO:0005664	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006267	GO:GO:0006270	GO:GO:0007049	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009744	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0031261	GO:GO:0048527	UniProt:K7LSF3	EnsemblPlants:KRH23980	ProteinID:KRH23980
ProteinID:KRH23980.1	ProteinID:KRH23981.1	InterPro:ORC3	PFAM:PF07034	PANTHER:PTHR12748	UniParc:UPI000294CC4C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:1045982..1059246

Molecular Weight (calculated)

83195.5 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.195

Length

736 amino acids

Sequence
(BLAST)

001: MAPSRSVADS TPPSTTSEVV ENDFQPFFVL HKASSRRKDR KPTAQGKLWK RNELSSSFPQ GAKKLGGRMT EECDHHLFQQ LQIEAFDIVW AKIESTIKDV
101: LRDLNAIVFN DIQKWVLECF NATKLLGEPT IAEATRSFPT LNNTTPGQMF TAFVSTRNIE FVDDILTFEE LGHFLKSHGC HVAKLSSLEF SSKNGIAGCL
201: KALLQEFLGC AIDSADISIL ASWYREQVNY NKPLLLIVND LERCCGSVLT DFILMLSEWV VKVPIIFIFG VATTVDASRN ILPSHALERL CPSRFMLGTP
301: VERMDAIVEA VLLKHCTTFS IGYKVAVFLR NYFINQDGTV TSFIRALKVA CLLHFSMEPL SVIHGQTLAE DQKEGKSALS PETLLKYIDE LPLCARNQTV
401: DHPTQKSMSE GLSELVTVQK LWSTAVLCLY EAGKYSRVRL LDLFCEALSQ DLYLSRVSDC HVGDEKDRDL SSTNDPRQQY SIMKSGGIIG KIVCKVRDIP
501: TGMLYQLIES WEKLTADVSE IHEKLKILQS SVRCEDGKSS RKSSKDNSKR YPVNIDKDAR MLNLQAIAFL DYLLRNFLKP VEGMPFHEIF CFKNVEKLQL
601: VLIGDPRRRI QVDLLEFHKI LRCSCCSKSG NALLPSRHDS SIMYSLAQEH GDLINLHDWF QSFRTIVIQH KNKRKQNSKQ SPSSKKRKDI NGSADQNEAS
701: IQARFCRAVT ELQITGLVRM PSKRRPDFAQ RVAFGL

Best Arabidopsis Sequence Match ( AT5G16690.1 )
(BLAST)

001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: ARFCRAVMEL QITGLIRMPS KRRPDFVQRV AFGS

Arabidopsis Description

ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.