Factsheet for VIT_16s0039g01440.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02290.t01
VIT_18s0001g10740.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16690.1	VIT_01s0026g02290.t01	AT1G26840.1	16179646
AT5G16690.1	VIT_18s0001g10740.t01	AT2G37560.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039753	Potato	cytosol	54.92	37.12
Zm00001d031073_P001	Maize	plastid	43.44	34.75
Bra008604.1-P	Field mustard	nucleus	54.51	19.7
CDX69432	Canola	nucleus	54.92	18.36
AT5G16690.1	Thale cress	nucleus	54.51	18.12
KRH23980	Soybean	plastid	54.1	17.93
Solyc12g013880.1.1	Tomato	nucleus	47.95	17.67
CDY49642	Canola	nucleus	54.92	17.11
HORVU2Hr1G029330.11	Barley	plastid	46.72	15.83
TraesCS7A01G213600.1	Wheat	plastid	45.49	15.44
TraesCS7B01G120800.1	Wheat	plastid	45.49	15.42
TraesCS7D01G215600.1	Wheat	plastid	45.49	15.42
EES17403	Sorghum	plastid	43.44	14.8
Os10t0402200-01	Rice	nucleus, plastid	43.03	14.62
GSMUA_Achr2P17940_001	Banana	nucleus	36.48	14.02
VIT_16s0039g01430.t01	Wine grape	nucleus	0.82	0.54
PGSC0003DMT400039751	Potato	nucleus	0.0	0.0

Protein Annotations

MapMan:13.2.1.1.3	UniProt:A5CBJ7	EMBL:AM489137	ProteinID:CAN71104	ProteinID:CAN71104.1	ProteinID:CCB50574
ProteinID:CCB50574.1	EMBL:FN595750	GO:GO:0000784	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003688	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005656	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006267	GO:GO:0006270	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0031261	InterPro:ORC3	PFAM:PF07034	PANTHER:PTHR12748
UniParc:UPI0001522A51	ArrayExpress:VIT_16s0039g01440	EnsemblPlantsGene:VIT_16s0039g01440	EnsemblPlants:VIT_16s0039g01440.t01	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:940364..955444

Molecular Weight (calculated)

27813.3 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.177

Length

244 amino acids

Sequence
(BLAST)

001: MATPDHAEND LQPFFVLHKA LVQKSERKSS GSRKIRRRIE LSPISAKNAE KMEIGTGEER DDHHYEHLRM EAFNFVWSKI ESTIKDVLRN INLNVFNEIH
101: RWVCESFDAI KSCGTTLTKA THSYPIVTDA TFRQLFTGLV FTKNMEFVDD LMTFEELGLH LKSHGCHVAN LSSIDFSANN GIGGCLRSLL RQFLMVTLDA
201: ADISILASWY SDQGNYNKPV VVIIDDMERC CGSVLSDFIL MLRY

Best Arabidopsis Sequence Match ( AT5G16690.2 )
(BLAST)

001: MAPSGTVADP PQCSTTDSFN SSDTAENDIR PFFVLHKASS GNHNGKLTGI VKSKRRIESP SPKIAKRSEV ESVEEEDGQF FSTLRFKVFE TVWSKIEKTI
101: EDVLRNSNSK VFSGIHDWIR ESFESIISSG ALKLSEAVRS YPVLTQASSK QLLTAMVLTR NLEMVDDLLT FEELELHLKS QGCHVAKLSS MDFSAKSGVG
201: GCLRGLLRQF VMPTVDVADV TILASWYREN KNHENPVVII VDDTERCCGP VLSDLILILS EWAIKVPIFL IMGVSTAHDA PRKILSVNAL QRLCATRFTL
301: SSPAERMDAV LKAVFLKPCS GFTVSHKVAL FMRSYFLCQD GTLTSFVRTL KIACLQHFSL EPLSIMLEHF CHDGVNQLSG EGTELLTEAT MKHAFDLPSV
401: TRNKITRSTF EMLPHFLLDL QRMPNPWSIV VLCLYEAGKF DKLRLLDIFC EILDPEARYL KYFSPSEIVN SQSHNSGRNN VIRRVLRKLR DLSPSQLSSM
501: LKSWENLTAE FTEINDKVIE LHPFMRAVEA AGQRQGLPNS PKKHASRSNS KLEKELKAMT DKVATVIEFM LREYMKPVES VPFHEILCFK NVDKLQSALL
601: GDPRGRIQLD LLESHDILHC VCCSQRGTTL LPSMHDTSIL YKLAQEHADV INLHDWYQSF KTILIPRSSK AKQKSKSSSK SKKRKEICEE PEAPAEALIQ
701: YPFLVKISNR

Arabidopsis Description

ORC3ORC3 [Source:UniProtKB/TrEMBL;Acc:A0A178UNG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.