Factsheet for VIT_01s0026g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02290.t01
VIT_06s0004g00530.t01
VIT_06s0004g02050.t01
VIT_13s0175g00030.t01
VIT_16s0039g01430.t01
VIT_16s0039g01440.t01
VIT_18s0001g10740.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	VIT_01s0026g02290.t01	AT1G26840.1	16179646
AT1G26840.1	VIT_18s0001g10740.t01	AT2G37560.1	16179646
AT1G26840.1	VIT_06s0004g00530.t01	AT4G12620.1	16179646
AT1G26840.1	VIT_06s0004g02050.t01	AT4G12620.1	16179646
AT1G26840.1	VIT_13s0175g00030.t01	AT4G12620.1	16179646
AT1G26840.1	VIT_16s0039g01430.t01	AT5G16690.1	16179646
AT1G26840.1	VIT_16s0039g01440.t01	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008733	Potato	nucleus	73.26	74.3
Solyc05g007450.2.1	Tomato	nucleus	72.57	73.59
KRH70714	Soybean	nucleus	71.88	72.38
KRH74848	Soybean	nucleus	70.49	70.98
GSMUA_Achr11P...	Banana	nucleus	68.75	68.75
CDY50731	Canola	nucleus	65.97	66.9
Bra024679.1-P	Field mustard	nucleus	64.24	66.79
CDY16197	Canola	nucleus	65.62	66.55
CDY45005	Canola	nucleus	65.62	66.55
CDY46436	Canola	cytosol, nucleus, plastid	65.62	66.55
Os07t0628600-00	Rice	nucleus, plastid	68.06	66.44
TraesCS2D01G163800.1	Wheat	nucleus, plastid	67.71	66.33
TraesCS2B01G183200.1	Wheat	nucleus, plastid	67.71	66.33
EER99752	Sorghum	nucleus, plastid	67.36	66.21
Bra016292.1-P	Field mustard	cytosol, nucleus, plastid	65.28	66.2
Zm00001d022226_P002	Maize	nucleus, plastid	67.01	65.87
TraesCS2A01G157700.1	Wheat	nucleus, plastid	67.71	65.66
AT1G26840.1	Thale cress	nucleus	64.24	65.14
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	65.28	64.83
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	57.99	64.23
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	54.86	63.2
CDY31509	Canola	extracellular	26.39	58.02
TraesCS5B01G221800.3	Wheat	nucleus	63.89	54.93

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100248173	wikigene:100248173	MapMan:13.2.1.1.6	ProteinID:CBI31970	ProteinID:CBI31970.3
UniProt:D7TN97	EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003688
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006270	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EntrezGene:LOC100248173	wikigene:LOC100248173	InterPro:ORC6	InterPro:ORC6_met/pln
PFAM:PD315657	PFAM:PF05460	PANTHER:PTHR13394	UniParc:UPI00015CBCD9	ArrayExpress:VIT_01s0026g02290	EnsemblPlantsGene:VIT_01s0026g02290
EnsemblPlants:VIT_01s0026g02290.t01	RefSeq:XP_002270584	RefSeq:XP_002270584.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:11767883..11770767

Molecular Weight (calculated)

32442.3 Da

IEP (calculated)

10.043

GRAVY (calculated)

-0.458

Length

288 amino acids

Sequence
(BLAST)

001: MDISDIAKKL GLSDSKHIIR KAAELRRLCD IQFDSSVIGV GEICKAIICL EIAASRWEEV IFDRPSAIKL SGMSEKAYNR SFNAMQNGLG VKTKLDIREL
101: GIRFGCVRLI PFVQKGLSLY KDRFLASLPA SRRTSADFTR PVFTAVAFYL CAKRHKLKID KLKLIELCGT SESEFSSVST SMKDLCHDVF GISKEKKDPK
201: DVKGNRELLD TLPGKRKLDD GGYSSDDALE LSSYKRRKQK DKLAYEEWKS SVTAANKQSK AKVPSRQTKQ TKLDFQKEVP ETQKLEAM

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.