Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G157700.1 | Wheat | nucleus, plastid | 81.92 | 71.72 |
| HORVU2Hr1G028500.1 | Barley | mitochondrion, nucleus | 78.46 | 70.34 |
| EER99752 | Sorghum | nucleus, plastid | 78.85 | 69.97 |
| Os07t0628600-00 | Rice | nucleus, plastid | 78.08 | 68.81 |
| Zm00001d022226_P002 | Maize | nucleus, plastid | 76.92 | 68.26 |
| TraesCS5D01G230600.1 | Wheat | mitochondrion, nucleus | 65.0 | 67.6 |
| TraesCS5B01G221800.3 | Wheat | nucleus | 80.38 | 62.39 |
| VIT_01s0026g02290.t01 | Wine grape | nucleus | 64.23 | 57.99 |
| GSMUA_Achr11P... | Banana | nucleus | 63.46 | 57.29 |
| PGSC0003DMT400008733 | Potato | nucleus | 60.77 | 55.63 |
| Solyc05g007450.2.1 | Tomato | nucleus | 60.38 | 55.28 |
| KRH70714 | Soybean | nucleus | 60.38 | 54.9 |
| KRH74848 | Soybean | nucleus | 58.85 | 53.5 |
| Bra024679.1-P | Field mustard | nucleus | 56.54 | 53.07 |
| CDY50731 | Canola | nucleus | 57.69 | 52.82 |
| CDY16197 | Canola | nucleus | 57.31 | 52.46 |
| CDY45005 | Canola | nucleus | 56.92 | 52.11 |
| CDY46436 | Canola | cytosol, nucleus, plastid | 56.54 | 51.76 |
| Bra016292.1-P | Field mustard | cytosol, nucleus, plastid | 56.54 | 51.76 |
| CDY31509 | Canola | extracellular | 25.77 | 51.15 |
| AT1G26840.1 | Thale cress | nucleus | 55.77 | 51.06 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.2.1.1.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005664 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:ORC6 | InterPro:ORC6_met/pln | PFAM:PD315657 | PFAM:PF05460 | EnsemblPlantsGene:TraesCS5A01G222800 | EnsemblPlants:TraesCS5A01G222800.2 |
| TIGR:cd11583 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:438823315..438824775
Molecular Weight (calculated)
28547.7 Da
IEP (calculated)
8.884
GRAVY (calculated)
-0.057
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMSAIAARL GLSGSRPFVR KAAELRRLCD INFDSSVLGI VSIPHRPSNH LLSLDLSVVR VSDAGFAQGE VCKAIICLEV AATKFQVMFD RSEAVQMSGM
101: SEKAYIRSFN ALQNGLGVKT TLDVRELGIQ FGCVRLIPFV QKGLVLYKER FLAALPPSRR SSTDFGRPMF TAAAFYLCAK RHKLKVDKLK LIDLCGTSSS
201: GFTTVSTSMG DLCFDVFGIA KEKKDPTSIK GNRELLDVLP SKRKHEDESS GDDNDDKLDV
101: SEKAYIRSFN ALQNGLGVKT TLDVRELGIQ FGCVRLIPFV QKGLVLYKER FLAALPPSRR SSTDFGRPMF TAAAFYLCAK RHKLKVDKLK LIDLCGTSSS
201: GFTTVSTSMG DLCFDVFGIA KEKKDPTSIK GNRELLDVLP SKRKHEDESS GDDNDDKLDV
001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
Arabidopsis Description
ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.