Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G299900.1 | Wheat | nucleus | 98.68 | 98.43 |
| TraesCS4A01G003800.1 | Wheat | nucleus | 98.42 | 98.16 |
| EER93232 | Sorghum | nucleus | 89.47 | 90.19 |
| Os03t0184700-01 | Rice | nucleus | 88.42 | 88.65 |
| EER92739 | Sorghum | nucleus | 86.58 | 87.5 |
| Zm00001d017423_P001 | Maize | nucleus | 86.05 | 86.74 |
| GSMUA_Achr10P... | Banana | nucleus | 51.84 | 64.17 |
| PGSC0003DMT400069464 | Potato | nucleus | 60.53 | 63.36 |
| Solyc06g073510.2.1 | Tomato | nucleus | 60.53 | 63.36 |
| KRH05698 | Soybean | endoplasmic reticulum, extracellular | 48.42 | 63.01 |
| Bra005184.1-P | Field mustard | nucleus | 59.21 | 61.98 |
| CDX74950 | Canola | nucleus | 58.68 | 61.43 |
| CDY70246 | Canola | nucleus | 58.68 | 61.43 |
| AT2G37560.1 | Thale cress | nucleus | 57.89 | 60.61 |
| KRH15345 | Soybean | nucleus | 57.89 | 60.11 |
| VIT_18s0001g10740.t01 | Wine grape | nucleus | 48.95 | 59.05 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G301600.1 | EnsemblPlantsGene:TraesCS4B01G301600 | GO:GO:0000808 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:ORC2 | PANTHER:PTHR14052 | PFAM:PF04084 | SEG:seg |
| MapMan:13.2.1.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:588204316..588206881
Molecular Weight (calculated)
42488.7 Da
IEP (calculated)
6.833
GRAVY (calculated)
-0.278
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRGGHAAA SSGSEDEEEE AEAGFSRSYF LAKEKEPSSA KKRARAAAAG KLSDLNLVDE QVLRASLAEI PPKHEKEVEA LTRSYKDQYR NWLFELRCGF
101: GLLMYGFGSK KLLLEDFAST TLTDFTVIVV NGYLPSINLK QVLATIAEMF WEQKKLKRKR HSGTRSQQSQ NFATQTMDDI ISFLNNQTSE DGVDGVCLLI
201: HNIDGPALRD AESQQCLAQV SCCPQIHIVA SVDHVNAPLL WDKKMVHTQF KWSWYHVPTF APYKVECVFY PLILASGGHA QTTKTALVVL QSLTPNAQSV
301: FRVLAEYQLA NEKEEGMPVS SLYTKCRERF LVSSQVTLNS HLTEFKDHDL IKIKKHSDGQ DCLHIPLVPD ALGKLLQELA
101: GLLMYGFGSK KLLLEDFAST TLTDFTVIVV NGYLPSINLK QVLATIAEMF WEQKKLKRKR HSGTRSQQSQ NFATQTMDDI ISFLNNQTSE DGVDGVCLLI
201: HNIDGPALRD AESQQCLAQV SCCPQIHIVA SVDHVNAPLL WDKKMVHTQF KWSWYHVPTF APYKVECVFY PLILASGGHA QTTKTALVVL QSLTPNAQSV
301: FRVLAEYQLA NEKEEGMPVS SLYTKCRERF LVSSQVTLNS HLTEFKDHDL IKIKKHSDGQ DCLHIPLVPD ALGKLLQELA
001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ
Arabidopsis Description
ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.