Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G183200.1 | Wheat | nucleus, plastid | 100.0 | 100.0 |
| HORVU2Hr1G028500.1 | Barley | mitochondrion, nucleus | 95.92 | 97.24 |
| TraesCS5D01G230600.1 | Wheat | mitochondrion, nucleus | 79.59 | 93.6 |
| EER99752 | Sorghum | nucleus, plastid | 89.46 | 89.76 |
| Os07t0628600-00 | Rice | nucleus, plastid | 89.46 | 89.15 |
| Zm00001d022226_P002 | Maize | nucleus, plastid | 87.07 | 87.37 |
| GSMUA_Achr11P... | Banana | nucleus | 67.35 | 68.75 |
| VIT_01s0026g02290.t01 | Wine grape | nucleus | 66.33 | 67.71 |
| KRH70714 | Soybean | nucleus | 63.27 | 65.03 |
| KRH74848 | Soybean | nucleus | 61.22 | 62.94 |
| PGSC0003DMT400008733 | Potato | nucleus | 60.54 | 62.68 |
| Solyc05g007450.2.1 | Tomato | nucleus | 60.54 | 62.68 |
| CDY50731 | Canola | nucleus | 59.18 | 61.27 |
| Bra024679.1-P | Field mustard | nucleus | 57.14 | 60.65 |
| CDY45005 | Canola | nucleus | 58.5 | 60.56 |
| CDY16197 | Canola | nucleus | 58.5 | 60.56 |
| AT1G26840.1 | Thale cress | nucleus | 58.5 | 60.56 |
| CDY46436 | Canola | cytosol, nucleus, plastid | 57.82 | 59.86 |
| Bra016292.1-P | Field mustard | cytosol, nucleus, plastid | 57.82 | 59.86 |
| CDY31509 | Canola | extracellular | 23.47 | 52.67 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.2.1.1.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005664 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:ORC6 | InterPro:ORC6_met/pln | PFAM:PD315657 | PFAM:PF05460 | PANTHER:PTHR13394 | EnsemblPlantsGene:TraesCS2D01G163800 |
| EnsemblPlants:TraesCS2D01G163800.1 | TIGR:cd11583 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2D:+:108769847..108772364
Molecular Weight (calculated)
32739.5 Da
IEP (calculated)
9.833
GRAVY (calculated)
-0.428
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMSAIAARL GLSGSRPVVR KAAELRRLCD INFDSSVLGI GEVCKAIICL EIAATKFQVI FDRSEAVRMS GMSEKAYIRS FNALQNGLGV KTTLDVRELG
101: IQFGCVRLIP FVQKGLALYK ERFLAALPPS RRSSTDFGRP VFTAAAFYLC AKRHKLKVDK LKLIDLCGTS SSEFTTVSTS MGDLCFDVFG IAKEKKDPTS
201: IKGNRELLDV LPSKRKHEDD SDHSDESSGD DNDDELDLPT HKRHKKMEKQ AYNQWKSSVI STNKQTKPDP TKPRKQAQLN FKKKLPLEVP PPAN
101: IQFGCVRLIP FVQKGLALYK ERFLAALPPS RRSSTDFGRP VFTAAAFYLC AKRHKLKVDK LKLIDLCGTS SSEFTTVSTS MGDLCFDVFG IAKEKKDPTS
201: IKGNRELLDV LPSKRKHEDD SDHSDESSGD DNDDELDLPT HKRHKKMEKQ AYNQWKSSVI STNKQTKPDP TKPRKQAQLN FKKKLPLEVP PPAN
001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
Arabidopsis Description
ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.