Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G299900.1 | Wheat | nucleus | 99.21 | 99.21 |
| TraesCS4B01G301600.1 | Wheat | nucleus | 98.16 | 98.42 |
| EER93232 | Sorghum | nucleus | 89.5 | 90.45 |
| Os03t0184700-01 | Rice | nucleus | 88.98 | 89.45 |
| EER92739 | Sorghum | nucleus | 87.14 | 88.3 |
| Zm00001d017423_P001 | Maize | nucleus | 86.61 | 87.53 |
| GSMUA_Achr10P... | Banana | nucleus | 52.23 | 64.82 |
| KRH05698 | Soybean | endoplasmic reticulum, extracellular | 49.08 | 64.04 |
| PGSC0003DMT400069464 | Potato | nucleus | 60.37 | 63.36 |
| Solyc06g073510.2.1 | Tomato | nucleus | 60.37 | 63.36 |
| Bra005184.1-P | Field mustard | nucleus | 59.32 | 62.26 |
| CDX74950 | Canola | nucleus | 58.79 | 61.71 |
| CDY70246 | Canola | nucleus | 58.79 | 61.71 |
| AT2G37560.1 | Thale cress | nucleus | 58.27 | 61.16 |
| KRH15345 | Soybean | nucleus | 58.53 | 60.93 |
| VIT_18s0001g10740.t01 | Wine grape | nucleus | 49.34 | 59.68 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G003800.1 | EnsemblPlantsGene:TraesCS4A01G003800 | GO:GO:0000808 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:ORC2 | PANTHER:PTHR14052 | PFAM:PF04084 | SEG:seg |
| MapMan:13.2.1.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:2938907..2940976
Molecular Weight (calculated)
42491.7 Da
IEP (calculated)
6.698
GRAVY (calculated)
-0.251
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRGGHAAA SSGSEDEEEE AEAGFSRSYF LAKEKETSSA KKRARAAAAV GKLSDLNLVD EQVLRASLAE IPPKHEKEVE ALTRSYKDQY RNWLFELRCG
101: FGLLMYGFGS KKLLLEDFAS TTLTDFTVIV VNGYLPSINL KQVLATIAEM FWEQTKLKRK RHSGTRSQPS QNFASQSMDD IISFLNNQTS EDGVDGVCLL
201: IHNIDGPALR DAESQQCLAQ VSCCPQIHVV ASVDHVNAPL LWDKKMVHTQ FKWSWYHVPT FAPYKVECVF YPLILASGGH AQTTKTALVV LQSLTPNAQS
301: VFRVLAEYQL ANEKEEGMPV SSLYTKCRER FLVSSQVTLN SHLTEFKDHD LIKIKKHSDG QDCLHIPLVP DALGKLLQEL A
101: FGLLMYGFGS KKLLLEDFAS TTLTDFTVIV VNGYLPSINL KQVLATIAEM FWEQTKLKRK RHSGTRSQPS QNFASQSMDD IISFLNNQTS EDGVDGVCLL
201: IHNIDGPALR DAESQQCLAQ VSCCPQIHVV ASVDHVNAPL LWDKKMVHTQ FKWSWYHVPT FAPYKVECVF YPLILASGGH AQTTKTALVV LQSLTPNAQS
301: VFRVLAEYQL ANEKEEGMPV SSLYTKCRER FLVSSQVTLN SHLTEFKDHD LIKIKKHSDG QDCLHIPLVP DALGKLLQEL A
001: MEDIENIEED EYGFSRNYFL AKELGGASKR SAHKLSDIHI VDEQELRETA STIEMKHSKE ISELMSDYKT MYSKWVFELR CGFGLLMYGF GSKKALVEDF
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ
101: ASASLTDYSV VVINGYLPSV NLKQVLLALA ELLSELLKCK RKSSGSLSKG QETFPSRSMD DILSFLHGPQ SGDKDCFICV VVHNIDGPAL RDPESQQTLA
201: RLSSCSHIRL VASIDHVNAP LLWDKKMVHK QFNWLWHHVP TFAPYNVEGV FFPLVLAQGS TAQTAKTAAI VLQSLTPNGQ NVFKILAEYQ LSHPDEDGMP
301: TDDLYSASRE RFFVSSQVTL NSHLTEFKDH ELVKTKRNSD GQECLNIPLT SDAIRQLLLD LNQ
Arabidopsis Description
ORC2Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.