Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G028500.1 | Barley | mitochondrion, nucleus | 94.95 | 97.24 |
| Os07t0628600-00 | Rice | nucleus, plastid | 87.54 | 88.14 |
| EER99752 | Sorghum | nucleus, plastid | 86.87 | 88.05 |
| Zm00001d022226_P002 | Maize | nucleus, plastid | 84.51 | 85.67 |
| TraesCS5A01G222800.2 | Wheat | mitochondrion, nucleus | 71.72 | 81.92 |
| GSMUA_Achr11P... | Banana | nucleus | 66.67 | 68.75 |
| VIT_01s0026g02290.t01 | Wine grape | nucleus | 65.66 | 67.71 |
| KRH70714 | Soybean | nucleus | 62.96 | 65.38 |
| KRH74848 | Soybean | nucleus | 60.94 | 63.29 |
| PGSC0003DMT400008733 | Potato | nucleus | 59.93 | 62.68 |
| Solyc05g007450.2.1 | Tomato | nucleus | 59.93 | 62.68 |
| CDY50731 | Canola | nucleus | 58.59 | 61.27 |
| Bra024679.1-P | Field mustard | nucleus | 56.57 | 60.65 |
| CDY45005 | Canola | nucleus | 57.91 | 60.56 |
| AT1G26840.1 | Thale cress | nucleus | 57.91 | 60.56 |
| CDY16197 | Canola | nucleus | 57.91 | 60.56 |
| CDY46436 | Canola | cytosol, nucleus, plastid | 57.24 | 59.86 |
| Bra016292.1-P | Field mustard | cytosol, nucleus, plastid | 57.24 | 59.86 |
| CDY31509 | Canola | extracellular | 23.57 | 53.44 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.2.1.1.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005664 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:ORC6 | InterPro:ORC6_met/pln | PFAM:PD315657 | PFAM:PF05460 | PANTHER:PTHR13394 | EnsemblPlantsGene:TraesCS2A01G157700 |
| EnsemblPlants:TraesCS2A01G157700.1 | TIGR:cd11583 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:104787425..104789548
Molecular Weight (calculated)
32937.7 Da
IEP (calculated)
9.753
GRAVY (calculated)
-0.392
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMSAIAARL GLSGSRPVVR KAAELRRLCD INFDSSVLGI GEVCKAIICL EIAATKFQVI FDRSEAVRMS GMSEKAFIRS FNALQNGLGV KTTLDVRELG
101: IQFGCVRLIP FVQKGLALYK ERFLAALPPS RRSSTDFGRP VFTAAAFYLC AKRHKLKVDK LKLIELCGTS SSEFTTVSTS MGDLCFDVFG IAKEKKDPTS
201: IKGNRELLDV LPSKRKHEDD SDHSDESSGD DNDDELDLPT HKRHKKMEKQ AYNQWKSSVI STNKQAKPDP TKPRKQAQLN FKKKLPDAAL EVPPPAS
101: IQFGCVRLIP FVQKGLALYK ERFLAALPPS RRSSTDFGRP VFTAAAFYLC AKRHKLKVDK LKLIELCGTS SSEFTTVSTS MGDLCFDVFG IAKEKKDPTS
201: IKGNRELLDV LPSKRKHEDD SDHSDESSGD DNDDELDLPT HKRHKKMEKQ AYNQWKSSVI STNKQAKPDP TKPRKQAQLN FKKKLPDAAL EVPPPAS
001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
Arabidopsis Description
ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.