Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G163800.1 | Wheat | nucleus, plastid | 93.6 | 79.59 |
| HORVU2Hr1G028500.1 | Barley | mitochondrion, nucleus | 90.0 | 77.59 |
| Os07t0628600-00 | Rice | nucleus, plastid | 85.2 | 72.2 |
| EER99752 | Sorghum | nucleus, plastid | 84.4 | 72.01 |
| Zm00001d022226_P002 | Maize | nucleus, plastid | 81.6 | 69.62 |
| TraesCS5A01G222800.2 | Wheat | mitochondrion, nucleus | 67.6 | 65.0 |
| TraesCS5B01G221800.3 | Wheat | nucleus | 85.6 | 63.88 |
| GSMUA_Achr11P... | Banana | nucleus | 65.2 | 56.6 |
| VIT_01s0026g02290.t01 | Wine grape | nucleus | 63.2 | 54.86 |
| KRH70714 | Soybean | nucleus | 60.8 | 53.15 |
| PGSC0003DMT400008733 | Potato | nucleus | 58.8 | 51.76 |
| Solyc05g007450.2.1 | Tomato | nucleus | 58.8 | 51.76 |
| KRH74848 | Soybean | nucleus | 58.8 | 51.4 |
| Bra024679.1-P | Field mustard | nucleus | 54.8 | 49.46 |
| AT1G26840.1 | Thale cress | nucleus | 55.2 | 48.59 |
| CDY50731 | Canola | nucleus | 54.8 | 48.24 |
| CDY16197 | Canola | nucleus | 54.4 | 47.89 |
| CDY45005 | Canola | nucleus | 54.0 | 47.54 |
| CDY46436 | Canola | cytosol, nucleus, plastid | 53.2 | 46.83 |
| Bra016292.1-P | Field mustard | cytosol, nucleus, plastid | 53.2 | 46.83 |
| CDY31509 | Canola | extracellular | 24.0 | 45.8 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G230600.1 | EnsemblPlantsGene:TraesCS5D01G230600 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005664 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:ORC6_met/pln | PANTHER:PTHR13394 | PFAM:PD315657 |
| SEG:seg | TIGR:cd11583 | MapMan:13.2.1.1.6 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:337681220..337683179
Molecular Weight (calculated)
27806.3 Da
IEP (calculated)
9.847
GRAVY (calculated)
-0.521
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMSAIAARL GLSGSRPVVR KAAELRRLWD INFDSSVLGI GEVCKAIIYL EIAATKTTLD VRELGIQFGC VRLIPFVQKG FVLYKERFLA ALPPSRDFGR
101: PVFTAAVFYL CAKRHKLKVD KLKLIDLCGT SSSESTTVST SMGDLCFDVF GIAKEKKDPT SIKGNRDAGL PSKRKHEDDS DHSDESSGDD NDDELDLPTH
201: KRHKKMEKQA YNQWKSSVIS TSKQTKPDPT KPRKQAQLNF KKKPPDAATS
101: PVFTAAVFYL CAKRHKLKVD KLKLIDLCGT SSSESTTVST SMGDLCFDVF GIAKEKKDPT SIKGNRDAGL PSKRKHEDDS DHSDESSGDD NDDELDLPTH
201: KRHKKMEKQA YNQWKSSVIS TSKQTKPDPT KPRKQAQLNF KKKPPDAATS
001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS
Arabidopsis Description
ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.