CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69432
CDX74950
CDY16197
CDY16697
CDY31509
CDY45005
CDY46436
CDY49642
CDY50731
CDY62377
CDY70246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26840.1	CDY16197	AT1G26840.1	16179646
AT1G26840.1	CDY31509	AT1G26840.1	16179646
AT1G26840.1	CDY45005	AT1G26840.1	16179646
AT1G26840.1	CDY46436	AT1G26840.1	16179646
AT1G26840.1	CDY50731	AT1G26840.1	16179646
AT1G26840.1	CDX74950	AT2G37560.1	16179646
AT1G26840.1	CDY70246	AT2G37560.1	16179646
AT1G26840.1	CDY16697	AT4G12620.1	16179646
AT1G26840.1	CDY62377	AT4G12620.1	16179646
AT1G26840.1	CDX69432	AT5G16690.1	16179646
AT1G26840.1	CDY49642	AT5G16690.1	16179646

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16197	Canola	nucleus	97.54	97.54
CDY45005	Canola	nucleus	92.25	92.25
CDY46436	Canola	cytosol, nucleus, plastid	91.9	91.9
AT1G26840.1	Thale cress	nucleus	89.44	89.44
PGSC0003DMT400008733	Potato	nucleus	68.66	68.66
Solyc05g007450.2.1	Tomato	nucleus	67.96	67.96
VIT_01s0026g02290.t01	Wine grape	nucleus	66.9	65.97
KRH70714	Soybean	nucleus	66.2	65.73
KRH74848	Soybean	nucleus	65.49	65.03
CDY31509	Canola	extracellular	29.93	64.89
Os07t0628600-00	Rice	nucleus, plastid	64.08	61.69
Zm00001d022226_P002	Maize	nucleus, plastid	63.38	61.43
EER99752	Sorghum	nucleus, plastid	63.03	61.09
GSMUA_Achr11P...	Banana	nucleus	60.56	59.72
TraesCS2B01G183200.1	Wheat	nucleus, plastid	61.27	59.18
TraesCS2D01G163800.1	Wheat	nucleus, plastid	61.27	59.18
TraesCS2A01G157700.1	Wheat	nucleus, plastid	61.27	58.59
HORVU2Hr1G028500.1	Barley	mitochondrion, nucleus	59.15	57.93
TraesCS5A01G222800.2	Wheat	mitochondrion, nucleus	52.82	57.69
TraesCS5D01G230600.1	Wheat	mitochondrion, nucleus	48.24	54.8
TraesCS5B01G221800.3	Wheat	nucleus	56.69	48.06

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.2.1.1.6	GO:A0A078IL34	UniProt:A0A078IL34	EnsemblPlants:CDY50731	ProteinID:CDY50731
ProteinID:CDY50731.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005664	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00097406001
InterPro:ORC6	InterPro:ORC6_met/pln	PFAM:PD315657	PFAM:PF05460	PANTHER:PTHR13394	UniParc:UPI0004EDC361
SEG:seg	:	:	:	:	:

Description

BnaC05g50940DBnaC05g50940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IL34]

Coordinates

chrLK032935:-:32968..34836

Molecular Weight (calculated)

31888.7 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.343

Length

284 amino acids

Sequence
(BLAST)

001: MDISDIARKL DLSNNKLVVR KAAEIRRLCD AQFDSSVIGV GEICKAVICL EMAASRLQVI FDRQAAIKLS GMSEKAYTRS FNSLQNVIGV KIKLNVKELA
101: IQFGCVRIIK SVHNMLSLYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLVEVCGTS ESEFSCVSTS MTDLCFDCVG VSKEKKDAKD
201: VKGNRELLDV LPEKRKLEDG GYSSDDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG PKKVIQTSLN FTKKAETQEL QVDS

Best Arabidopsis Sequence Match ( AT1G26840.1 )
(BLAST)

001: MDISDIGRKL SLDNNKLLIR KAAEIRRLCD AQFDSSIIGV GEICKAVICL EIAATRLQII FDRQAAVKLS GMSEKAYSRS FNSLQNVIGI KIKLNVRELA
101: VQFGCVRVIK SVQNVLSSYK ERFLASLPAS RRANADFTRP VFTAAAFYLC AKKQKLKVDK LRLIEVCGTS ESEFSCVSTS MTDLCFDCVG ISKEKKDAKD
201: VKGNRDLLDV LPGKRRLEDG GYSSGDESSC YKRHKKMEEA KYEDWKSTVV NSIKKNPEKG TKRVIQASLN FPKKSETKEL QVDS

Arabidopsis Description

ORC6Origin of replication complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.