CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69432
CDX69674
CDX74179
CDX74950
CDX76134
CDX76137
CDX79500
CDX85673
CDX90234
CDX91149
CDX97221
CDX99891
CDY13226
CDY16197
CDY21118
CDY26285
CDY28657
CDY30010
CDY31509
CDY32273
CDY40519
CDY40664
CDY41887
CDY45005
CDY46436
CDY49642
CDY50731
CDY50744
CDY50846
CDY53532
CDY53643
CDY59229
CDY67450
CDY68615
CDY70246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12620.1	CDY16197	AT1G26840.1	16179646
AT4G12620.1	CDY31509	AT1G26840.1	16179646
AT4G12620.1	CDY45005	AT1G26840.1	16179646
AT4G12620.1	CDY46436	AT1G26840.1	16179646
AT4G12620.1	CDY50731	AT1G26840.1	16179646
AT4G12620.1	CDX74950	AT2G37560.1	16179646
AT4G12620.1	CDY70246	AT2G37560.1	16179646
AT4G12620.1	CDX69674	AT5G13060.1	18818695
AT4G12620.1	CDX85673	AT5G13060.1	18818695
AT4G12620.1	CDX91149	AT5G13060.1	18818695
AT4G12620.1	CDX97221	AT5G13060.1	18818695
AT4G14700.1	CDX90234	AT1G30210.1	18818695
AT4G14700.1	CDX99891	AT1G30210.1	18818695
AT4G14700.1	CDY26285	AT1G30210.1	18818695
AT4G14700.1	CDY59229	AT1G30210.1	18818695
AT4G14700.1	CDX74179	AT3G04620.1	20706207
AT4G14700.1	CDX79500	AT3G04620.1	20706207
AT4G14700.1	CDY21118	AT3G04620.1	20706207
AT4G14700.1	CDY28657	AT3G04620.1	20706207
AT4G14700.1	CDY30010	AT3G04620.1	20706207
AT4G14700.1	CDY40664	AT3G04620.1	20706207
AT4G14700.1	CDY41887	AT3G04620.1	20706207
AT4G14700.1	CDY50744	AT3G04620.1	20706207
AT4G14700.1	CDY53532	AT3G04620.1	20706207
AT4G14700.1	CDY68615	AT3G04620.1	20706207
AT4G14700.1	CDX76134	AT3G54710.1	18818695
AT4G14700.1	CDX76137	AT3G54710.1	18818695
AT4G14700.1	CDY13226	AT3G54710.1	18818695
AT4G14700.1	CDY67450	AT3G54710.1	18818695
AT4G14700.1	CDY32273	AT4G16630.1	20706207
AT4G14700.1	CDY40519	AT4G16630.1	20706207
AT4G14700.1	CDY50846	AT4G16630.1	20706207
AT4G14700.1	CDY53643	AT4G16630.1	20706207
AT4G14700.1	CDX69674	AT5G13060.1	18818695
AT4G14700.1	CDX85673	AT5G13060.1	18818695
AT4G14700.1	CDX91149	AT5G13060.1	18818695
AT4G14700.1	CDX97221	AT5G13060.1	18818695
AT4G14700.1	CDX69432	AT5G16690.1	18818695
AT4G14700.1	CDY49642	AT5G16690.1	18818695

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16697	Canola	plastid	96.57	97.4
Bra029471.1-P	Field mustard	plastid	96.69	97.05
AT4G14700.1	Thale cress	plastid	78.55	79.23
PGSC0003DMT400033355	Potato	cytosol	8.46	75.82
AT4G12620.1	Thale cress	plastid	73.28	73.55
VIT_06s0004g00530.t01	Wine grape	cytosol	53.31	67.34
Solyc03g006420.2.1	Tomato	nucleus	62.87	61.73
KRH10202	Soybean	nucleus	63.97	61.12
KRH23133	Soybean	nucleus	63.73	61.1
GSMUA_Achr8P31340_001	Banana	nucleus	59.31	60.5
PGSC0003DMT400033353	Potato	nucleus, plastid	53.68	58.56
VIT_06s0004g02050.t01	Wine grape	nucleus	63.6	57.16
OQU75979	Sorghum	plastid	56.0	56.42
TraesCS7D01G153500.1	Wheat	plastid	55.76	54.89
Zm00001d045080_P001	Maize	plastid	54.53	54.4
TraesCS7A01G151700.1	Wheat	plastid	51.96	54.15
VIT_13s0175g00030.t01	Wine grape	extracellular	10.29	53.5
TraesCS7B01G055600.1	Wheat	nucleus	56.25	51.81
Zm00001d037086_P006	Maize	nucleus, plastid	55.51	51.19
HORVU7Hr1G031190.2	Barley	nucleus	55.88	48.2
HORVU3Hr1G033880.2	Barley	plastid	10.54	33.08
CDY06693	Canola	nucleus	12.38	21.0
CDY02004	Canola	nucleus, plastid	12.13	19.84
CDX94733	Canola	cytosol	3.43	19.18
CDX95747	Canola	plastid	12.5	19.14
CDY10263	Canola	plastid	11.76	18.9
CDY71310	Canola	cytosol	3.55	18.35

Protein Annotations

Gene3D:1.10.8.1280	MapMan:13.2.1.1.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	Gene3D:3.40.50.300	GO:A0A078J711
UniProt:A0A078J711	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:BAH_dom	EnsemblPlants:CDY62377	ProteinID:CDY62377
ProteinID:CDY62377.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005524
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00036210001	InterPro:IPR001025	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR019787
InterPro:ORC1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS50089	PFscan:PS51038	PANTHER:PTHR10763	PANTHER:PTHR10763:SF23	SMART:SM00249
SMART:SM00382	SMART:SM00439	SUPFAM:SSF52540	SUPFAM:SSF57903	UniParc:UPI0004EC70ED	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaCnng40110DBnaCnng40110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J711]

Coordinates

chrLK034134:-:5841..8291

Molecular Weight (calculated)

92375.2 Da

IEP (calculated)

7.573

GRAVY (calculated)

-0.567

Length

816 amino acids

Sequence
(BLAST)

001: MAASTPRTKT FQSPNKTPTN SIYRKSYLSP SSSSATRSHL TPQTPQTLTP LRRSARHVSR KIDLGDNDQE NLNPPIEEMN LIRKRERAPR KQPTDDLQTP
101: KKSKSKSNVD EVSFSPVSPI RSEKKRKTAE RSSNKRVYYT KVEFDSVEFQ IGDDVYVKRK EDEEDDDDAE FEDCRICFKS GSSNNVMLEC DHCLGGFHLK
201: CLKPPLKEVP EGDWICQFCQ GHTLEAPKPP EGKKVARTAR EKLLSSDLWA ARIEKLWRGA DGVYWVRARW YMIPEETASG RQPHNLKREV YLTNDFADVE
301: MRSVLRHCFV KSPKEFAKAS NDGDDVFLCE YEYDVHWHSF KRLAELADGD CESDDHEWMK EEEEVGDSDD EVMEVEDEAS VRDSKSKRGL ASSKAANSLK
401: GRFFGLDKVG AKRIPEHVRC HKQSELEKAK ATLLLATRPK SLPCRNKEME EITAFIKGSI SDDQCLGRCM YIHGVPGTGK TVSVLSVMKN LKAEVEAGIV
501: SPYCFVEING LKLASPEKIY TVIYEALSGH RVGWKKALHS LNERFSEGKR IGKEDEKPCI LLIDELDLLV TRNQSVLYNI LDWPTKPNSK LIVLGIANTM
601: DLPEKLLPRI SSRMGIQRLC FGPYNHTQLQ EIISTRLKGI DAFEKQAIEF ASRKVAAISG DARRALEICR RAAEVADYRL KDNTSAKNQL VVMSDVEAAI
701: QEMFQAPHIQ VMKSVSKLSK IYLTAMVHEL YKTGMAETTF DRVATTVSSL CGTNGEAFPG WDVLLKVGCE LGECRIILCE PGERHRLQKL QLNFPSDDVA
801: FALKDNKELP WLGNYL

Best Arabidopsis Sequence Match ( AT4G12620.1 )
(BLAST)

001: MASTPRAKTF KSPTKTPSNI YRKSYLSPSS TSHTPQTPET HTPLRRSARH VSRKIDLGND PIDAPGNDPI EGMNLIRKRE RAPRKPTTDV VPSKSKKTET
101: PKKKKKIDSF TPVSPIRSET IKKTKKKKRV YYNKVEFDET EFEIGDDVYV KRREDSNSDE EEDPEIEDCQ ICFKSDTNIM IECDDCLGGF HLKCLKPPLK
201: EVPEGDWICQ FCEVKKSGQS QTLDLPKPPE GKKLARTMRE KLLSGDLWAA RIDKLWKEVD DGVYWIRARW YMIPEETVSG RQPHNLKREL YLTNDFADIE
301: MECILRHCSV KCPKEFSKAS NDGDDVFLCE YEYDVHWRSF KRLAELADGD SDSDQEWNGR KEEEVDDSDE EMELDDEVLK SKRGGLTSAR GGANSRKGRF
401: FGVEKVGMKL IPEHVRCHKQ SELEKAKATL LLATRPKSLP CRSKEMEEIT SFIKGSISDD QCLGRCMYIH GVPGTGKTIS VLSVMKNLKA EVEEGSVSPY
501: CFVEINGLKL ASPENIYSVI YEALSGHRVG WKKALQCLNE RFAEGKRIGK EDEKPCILLI DELDLLVTRN QSVLYNILDW PTKPNSKLVV LGIANTMDLP
601: EKLLPRISSR MGIQRLCFGP YNHTQLQEII STRLNGIDAF EKTAIEFASR KVAAISGDAR RALEICRRAA EVADHRLNTN KSAKNQLVIM ADVEAAIQEM
701: FQAPHIQVMK SVSKLSKIFL TAMVHELYKT GMAETTFDRV ATTVSSICLT NGEAFPGWDI LLKIGCDLGE CRIILCEPGE KHRLQKLQLN FPSDDVAFAL
801: KDNKDLPWLA NYL

Arabidopsis Description

ORC1BUNE13 [Source:UniProtKB/TrEMBL;Acc:A0A178UTR9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.