CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 2
endoplasmic reticulum 3
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71081
CDX89193
CDX95121
CDY03047
CDY04583
CDY06280
CDY07783
CDY09359
CDY18994
CDY22719
CDY32809
CDY41685
CDY42075
CDY45206
CDY60513
CDY60565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	CDY06280	AT1G07660.1	20706207
AT2G29680.1	CDX95121	AT1G07820.1	20706207
AT2G29680.1	CDY03047	AT2G02560.1	20706207
AT2G29680.1	CDY09359	AT2G02560.1	20706207
AT2G29680.1	CDY41685	AT2G02560.1	20706207
AT2G29680.1	CDY45206	AT2G02560.1	20706207
AT2G29680.1	CDY04583	AT2G28740.1	20706207
AT2G29680.1	CDY42075	AT2G31920.1	20706207
AT2G29680.1	CDY60513	AT2G31920.1	20706207
AT2G29680.1	CDY07783	AT3G45930.1	20706207
AT2G29680.1	CDY22719	AT3G45930.1	20706207
AT2G29680.1	CDY32809	AT3G46320.1	20706207
AT2G29680.1	CDX71081	AT3G53730.1	20706207
AT2G29680.1	CDX89193	AT4G28230.1	20706207
AT2G29680.1	CDY18994	AT4G28230.1	20706207
AT2G29680.1	CDY60565	AT5G59690.1	20706207
AT2G29680.1	CDY32809	AT5G59970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02004	Canola	nucleus, plastid	71.48	76.35
AT2G29680.1	Thale cress	plastid	74.48	73.65
CDY71310	Canola	cytosol	21.39	72.15
CDY06693	Canola	nucleus	60.98	67.57
CDX94733	Canola	cytosol	18.01	65.75
CDY10263	Canola	plastid	60.98	63.98
KRG98340	Soybean	mitochondrion, plastid	51.03	57.38
KRH46438	Soybean	plastid	50.47	56.99
VIT_06s0004g06300.t01	Wine grape	plastid	52.91	55.95
TraesCS3B01G400900.1	Wheat	plastid	43.53	52.73
Solyc06g076860.2.1	Tomato	nucleus	52.53	52.63
PGSC0003DMT400078033	Potato	cytosol	52.53	52.43
GSMUA_Achr6P33780_001	Banana	nucleus	47.28	51.12
Zm00001d012320_P002	Maize	plastid	45.97	50.0
HORVU3Hr1G084800.19	Barley	plastid	43.34	49.57
Zm00001d042810_P001	Maize	plastid	45.22	49.28
EES01777	Sorghum	plastid	45.4	49.19
TraesCS3D01G362000.1	Wheat	plastid	44.84	47.9
Os01t0856000-02	Rice	nucleus, plastid	46.15	47.77
TraesCS3A01G369000.1	Wheat	plastid	44.65	47.7
CDY16697	Canola	plastid	19.14	12.61
CDY62377	Canola	plastid	19.14	12.5

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.60	MapMan:13.2.1.4	Gene3D:3.40.50.300	GO:A0A078E3M4	InterPro:AAA+_ATPase
EnsemblPlants:CDX95747	ProteinID:CDX95747	ProteinID:CDX95747.1	InterPro:Cdc6/18	InterPro:Cdc6_C	GO:GO:0006139
GO:GO:0006259	GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0051301	EnsemblPlantsGene:GSBRNA2T00101653001	InterPro:IPR036388	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401
PIRSF:PIRSF001767	PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785	SUPFAM:SSF52540
UniParc:UPI0004EEE0DA	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC03g26280D

Coordinates

chrLK031890:-:1092720..1096328

Molecular Weight (calculated)

59338.2 Da

IEP (calculated)

9.101

GRAVY (calculated)

-0.219

Length

533 amino acids

Sequence
(BLAST)

001: MRFVLHFDSI SISISISISL LFYSTMPTIA GPSSSPHKHI VAARSENTGV PEVNTPRKRK LRSDSADEVA STAIVTESSF ATPMKWKSPR RCAVSSPKTL
101: KKEDSKGKLD SPVMSAVKDR FDCLDVKSKW NPREDDQMKA VKEALHVSKA PSTVVCREDE QRRVLEFVKG CMEQKKAGSL YICGCPGTGK SLSMEKIRQQ
201: AEDWAQQEGL PCLETVSVNC TSLTKTTDIF SKILGESETG KKVNGPSSPL QRLQVLFSQK QQSSSTKMML IIADEMDYLI TRDRGVLHEL FMLTTLPFSR
301: CILIGVANAI DLADRFLPKL KSLNCKPLVV TFRAYSMEQI LRILQERLVE LPYVAFQSKA LELCARKVSA ASGDMRKALS VCRSALEILE TEVKGSTEQE
401: PQSPVTEDQV VKMDHMVAAL SKTFKSPVVD TIQSLPQHQQ IIVCSAAKAF RGSKKDRSIA ELNKLYTEIC KSSMITPAGI TEFTNMCTVL NDQGILKLSN
501: ARDDKLKRVS LRVDEADITF ALKEIRFFRN CLL

Best Arabidopsis Sequence Match ( AT2G29680.2 )
(BLAST)

001: MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SKDQILRILQ ERLVALPFVA FQSNALEICA RKVSAASGDM RKALCVCRSA LEILEIEVRG SIDQEPKGPV PECQVVKMDH MIAALSKTFK
401: SPIVDTIQSL PQHQQIIVCS AAKAFRGSKK DRTIAELNKL YLEICKSSMI TPAGITEFSN MCTVLNDQGI LKLSLARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL

Arabidopsis Description

CDC6Cell division control protein 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:O82387]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.