CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01878
KRH10345
KRH13842
KRH24981
KRH30104
KRH30347
KRH32592
KRH43579
KRH51281
KRH62794
KRH75237

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	KRH32592	AT1G07660.1	20706207
AT2G29680.1	KRH01878	AT2G02560.1	20706207
AT2G29680.1	KRH51281	AT2G02560.1	20706207
AT2G29680.1	KRH75237	AT2G02560.1	20706207
AT2G29680.1	KRH13842	AT2G31920.1	20706207
AT2G29680.1	KRH43579	AT2G31920.1	20706207
AT2G29680.1	KRH30347	AT3G45930.1	20706207
AT2G29680.1	KRH10345	AT3G53730.1	20706207
AT2G29680.1	KRH24981	AT3G53730.1	20706207
AT2G29680.1	KRH30104	AT4G28230.1	20706207
AT2G29680.1	KRH62794	AT4G28230.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46438	Soybean	plastid	93.25	93.64
PGSC0003DMT400078033	Potato	cytosol	61.39	54.49
VIT_06s0004g06300.t01	Wine grape	plastid	57.81	54.37
Solyc06g076860.2.1	Tomato	nucleus	60.76	54.14
CDY02004	Canola	nucleus, plastid	56.96	54.11
TraesCS3B01G400900.1	Wheat	plastid	48.95	52.73
AT1G07270.1	Thale cress	plastid	56.12	52.67
Zm00001d012320_P002	Maize	plastid	54.01	52.24
CDY06693	Canola	nucleus	52.74	51.98
AT2G29680.1	Thale cress	plastid	58.86	51.76
EES01777	Sorghum	plastid	53.16	51.22
CDX95747	Canola	plastid	57.38	51.03
Zm00001d042810_P001	Maize	plastid	51.9	50.31
CDY10263	Canola	plastid	53.59	50.0
CDX94733	Canola	cytosol	15.4	50.0
GSMUA_Achr6P33780_001	Banana	nucleus	51.69	49.7
Bra015569.1-P	Field mustard	nucleus	51.69	49.6
HORVU3Hr1G084800.19	Barley	plastid	47.89	48.71
Os01t0856000-02	Rice	nucleus, plastid	52.53	48.35
CDY71310	Canola	cytosol	16.03	48.1
TraesCS3A01G369000.1	Wheat	plastid	49.79	47.29
TraesCS3D01G362000.1	Wheat	plastid	49.37	46.89
KRH23133	Soybean	nucleus	22.15	12.34
KRH10202	Soybean	nucleus	21.52	11.94

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.2.1.4	Gene3D:3.40.50.300	UniProt:A0A0R0F8L3	InterPro:AAA+_ATPase	EMBL:ACUP02010877
InterPro:Cdc6/18	InterPro:Cdc6_C	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G066900	GO:GO:0006139	GO:GO:0006259
GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051301
InterPro:IPR036388	EnsemblPlants:KRG98340	ProteinID:KRG98340	ProteinID:KRG98340.1	InterPro:P-loop_NTPase	PFAM:PF09079
PFAM:PF13401	PIRSF:PIRSF001767	PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785
SUPFAM:SSF52540	UniParc:UPI0006EDB019	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:6167664..6173086

Molecular Weight (calculated)

52751.1 Da

IEP (calculated)

8.950

GRAVY (calculated)

-0.271

Length

474 amino acids

Sequence
(BLAST)

001: MPVIAAKRTL RSHPSSPPRK SPRRCTAATP NSTPTKNRLG GADENQADPA AVKPKWNPKD GEQLKRAKMA LHLSTAPSSV VCREEEQNMV LEFCKGCVEH
101: QKAGSLYICG CPGTGKSLSM EKVKDKLLNW AKEEGLPLPD VLSVNCTTLT NTSDIFTKQI LGLNQTQGKK VSALPLQQLQ NMYSQKSSVK NMTLIVADEL
201: DYLITKDRAV LHDLFMLTTF PFSRCILIGV ANAIDLADRF LPRLTSLNCK PIVVNFRAYS KDQILKILEE RLNEFPYSVF QQQALELCAR KVAATSGDMR
301: NALCICGSAI EMLEAEIRES ACNLNTSLEE ISSSRQNFAT APDFMKKREF DTVKTDHMAR ALSKTYRSPV VDTIQSLPHH QQIVLCSSMK HFRGAKKDAI
401: LGELYKSYVG VCKSCLIPPA GILEFSNMCR VLNDQGLIKL GQSREDKLRR VSPKIDEGDI TFALQGIRFF QNCL

Best Arabidopsis Sequence Match ( AT2G29680.2 )
(BLAST)

001: MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SKDQILRILQ ERLVALPFVA FQSNALEICA RKVSAASGDM RKALCVCRSA LEILEIEVRG SIDQEPKGPV PECQVVKMDH MIAALSKTFK
401: SPIVDTIQSL PQHQQIIVCS AAKAFRGSKK DRTIAELNKL YLEICKSSMI TPAGITEFSN MCTVLNDQGI LKLSLARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL

Arabidopsis Description

CDC6Cell division control protein 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:O82387]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.