Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G400900.1 | Wheat | plastid | 86.27 | 91.36 |
| TraesCS3D01G362000.1 | Wheat | plastid | 89.7 | 83.77 |
| TraesCS3A01G369000.1 | Wheat | plastid | 89.27 | 83.37 |
| EES01777 | Sorghum | plastid | 76.82 | 72.76 |
| Zm00001d012320_P002 | Maize | plastid | 75.97 | 72.24 |
| Zm00001d042810_P001 | Maize | plastid | 73.82 | 70.35 |
| Os01t0856000-02 | Rice | nucleus, plastid | 75.75 | 68.54 |
| GSMUA_Achr6P33780_001 | Banana | nucleus | 53.22 | 50.3 |
| KRH46438 | Soybean | plastid | 49.57 | 48.94 |
| VIT_06s0004g06300.t01 | Wine grape | plastid | 51.93 | 48.02 |
| KRG98340 | Soybean | mitochondrion, plastid | 48.71 | 47.89 |
| AT1G07270.1 | Thale cress | plastid | 51.5 | 47.52 |
| CDY06693 | Canola | nucleus | 48.5 | 46.99 |
| CDY02004 | Canola | nucleus, plastid | 49.14 | 45.89 |
| Bra015569.1-P | Field mustard | nucleus | 48.5 | 45.75 |
| PGSC0003DMT400078033 | Potato | cytosol | 51.5 | 44.94 |
| Solyc06g076860.2.1 | Tomato | nucleus | 51.29 | 44.92 |
| CDX95747 | Canola | plastid | 49.57 | 43.34 |
| CDY10263 | Canola | plastid | 47.21 | 43.31 |
| AT2G29680.1 | Thale cress | plastid | 49.79 | 43.04 |
| CDY71310 | Canola | cytosol | 14.38 | 42.41 |
| CDX94733 | Canola | cytosol | 12.45 | 39.73 |
| HORVU7Hr1G031190.2 | Barley | nucleus | 23.39 | 11.52 |
| HORVU3Hr1G033880.2 | Barley | plastid | 3.0 | 5.38 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.8.60 | MapMan:13.2.1.4 | Gene3D:3.40.50.300 | UniProt:A0A287M139 | InterPro:AAA+_ATPase |
| InterPro:Cdc6/18 | InterPro:Cdc6_C | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006270 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0051301 | EnsemblPlantsGene:HORVU3Hr1G084800 | EnsemblPlants:HORVU3Hr1G084800.19 |
| InterPro:IPR036388 | InterPro:P-loop_NTPase | PFAM:PF09079 | PFAM:PF13401 | PIRSF:PIRSF001767 | PANTHER:PTHR10763 |
| PANTHER:PTHR10763:SF26 | SMART:SM01074 | SUPFAM:SSF46785 | SUPFAM:SSF52540 | UniParc:UPI000B4721BE | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | : | : | : | : | : |
Description
Cell division control protein [Source:UniProtKB/TrEMBL;Acc:A0A287M139]
Coordinates
chrchr3H:-:609227282..609231654
Molecular Weight (calculated)
51865.1 Da
IEP (calculated)
8.979
GRAVY (calculated)
-0.168
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MTARRAADSP DSPQFTSPHK SPLAGSAHFG APKMLSASPK SSRKRLYGDL VPAERPKWNP RDPAQMQAVK EALHVATTPS CGLVCRDDEQ RRVFEFCKAC
101: VQQERAGSLY VCGCPGTGKT LSISKVKQSV SRWADEMGME TPDDLSINCT NFGNTSDIFG KILEKFQVRK KAGGKLSPLQ QLQRMFSHKE SAPRRMLLVV
201: VDEMDYLITR DRAVLHDLFM LTTLQFSRCI LIGIANAIDL ADRFLPKLES LNCKPLVITF RAYSKDQISN IINHRLKVLE YDVFEPMAIE FCARKVAAAT
301: GDMRKALGVC RSAVEIFESG LQDSSDKGAG VVTFDHMDIA LSKVFKPAVV NNILCLPQHQ QMVLCALANT FQHSRKKATT LGELNKSYIE ICRSTQVPAV
401: GMLEFSNMCM ILSDQGYLKL GQSKEDKLRR VTLQIDISDI TFAFKVRKDG LTPVTTQMSA ALFEVY
101: VQQERAGSLY VCGCPGTGKT LSISKVKQSV SRWADEMGME TPDDLSINCT NFGNTSDIFG KILEKFQVRK KAGGKLSPLQ QLQRMFSHKE SAPRRMLLVV
201: VDEMDYLITR DRAVLHDLFM LTTLQFSRCI LIGIANAIDL ADRFLPKLES LNCKPLVITF RAYSKDQISN IINHRLKVLE YDVFEPMAIE FCARKVAAAT
301: GDMRKALGVC RSAVEIFESG LQDSSDKGAG VVTFDHMDIA LSKVFKPAVV NNILCLPQHQ QMVLCALANT FQHSRKKATT LGELNKSYIE ICRSTQVPAV
401: GMLEFSNMCM ILSDQGYLKL GQSKEDKLRR VTLQIDISDI TFAFKVRKDG LTPVTTQMSA ALFEVY
001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQVCCFR GY
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQVCCFR GY
Arabidopsis Description
CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.