Factsheet for Zm00001d012320_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005791_P001
Zm00001d020584_P001
Zm00001d027974_P002
Zm00001d046662_P001
Zm00001d049167_P001
Zm00001d050298_P001
Zm00001d051478_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	Zm00001d020584_P001	AT1G07660.1	20706207
AT2G29680.1	Zm00001d027974_P002	AT2G02560.1	20706207
AT2G29680.1	Zm00001d046662_P001	AT2G02560.1	20706207
AT2G29680.1	Zm00001d049167_P001	AT2G02560.1	20706207
AT2G29680.1	Zm00001d050298_P001	AT2G02560.1	20706207
AT2G29680.1	Zm00001d005791_P001	AT3G46320.1	20706207
AT2G29680.1	Zm00001d051478_P001	AT3G53730.1	20706207
AT2G29680.1	Zm00001d005791_P001	AT5G59970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042810_P001	Maize	plastid	90.0	90.18
EES01777	Sorghum	plastid	87.55	87.2
TraesCS3B01G400900.1	Wheat	plastid	71.02	79.09
HORVU3Hr1G084800.19	Barley	plastid	72.24	75.97
Os01t0856000-02	Rice	nucleus, plastid	79.39	75.53
TraesCS3D01G362000.1	Wheat	plastid	76.53	75.15
TraesCS3A01G369000.1	Wheat	plastid	76.53	75.15
KRG98340	Soybean	mitochondrion, plastid	52.24	54.01
KRH46438	Soybean	plastid	51.43	53.39
GSMUA_Achr6P33780_001	Banana	nucleus	53.06	52.74
VIT_06s0004g06300.t01	Wine grape	plastid	51.43	50.0
CDY06693	Canola	nucleus	47.55	48.44
PGSC0003DMT400078033	Potato	cytosol	52.24	47.94
AT1G07270.1	Thale cress	plastid	49.39	47.92
Solyc06g076860.2.1	Tomato	nucleus	51.84	47.74
CDY02004	Canola	nucleus, plastid	48.37	47.49
CDX95747	Canola	plastid	50.0	45.97
Bra015569.1-P	Field mustard	nucleus	46.12	45.75
CDY10263	Canola	plastid	47.35	45.67
AT2G29680.1	Thale cress	plastid	48.78	44.34
CDY71310	Canola	cytosol	14.08	43.67
CDX94733	Canola	cytosol	11.63	39.04
Zm00001d045080_P001	Maize	plastid	22.45	13.45
Zm00001d037086_P006	Maize	nucleus, plastid	22.45	12.43

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.60	MapMan:13.2.1.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ProteinID:AQK99331.1
ProteinID:AQK99332.1	InterPro:Cdc6/18	InterPro:Cdc6_C	GO:GO:0006139	GO:GO:0006259	GO:GO:0006270
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051301	InterPro:IPR036388
UniProt:K7V790	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401	PIRSF:PIRSF001767	PANTHER:PTHR10763
PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785	SUPFAM:SSF52540	UniParc:UPI000220B52C	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d012320	EnsemblPlants:Zm00001d012320_P002	EnsemblPlants:Zm00001d012320_T002	SEG:seg	:

Description

Cell division control protein 6 homolog B

Coordinates

chr8:-:172365657..172369913

Molecular Weight (calculated)

54183.2 Da

IEP (calculated)

9.267

GRAVY (calculated)

-0.149

Length

490 amino acids

Sequence
(BLAST)

001: MPTLRSATAN ASPVATPSPA AASTPRSVKR RLTPGRAGES PKASRHTSPH RSPHAGTGTV CIPKLLSASP KSSRKRLYGD LVAAEKPKWN PRDAAQIRAV
101: KEALHVATVP SSELVCRDNE LRRVLEFCKV CVQQEKAGSL YVCGCPGTGK TLSINKVKDS LVCWADEMGM ETPDALAINC TNLANTSEIF GKILGKLQNQ
201: KKGSSKLLPL QQLQSMFSNK DLAPRRMMLV IVDEMDYLIT RDRAVLHDLF MLTTYPFSRC ILIGIANAID LADRFLPKLE SLNCKPLVVT FRAYSKDQIT
301: DIVKHRLKVL EYDVFEPLAL EFCARKVAAA SGDMRKALGV CRSAVEVLEA RLHDSPDQEL GIVTFDHMDM ALSKAFKSAV VDSILCLPQH QQMVLCALAN
401: TFQHCKKKAT TLGELNKSYI EICRSTQVPA VGMLEFSNMC MVLSDQGFMK LGQSKEDKLR RVTLQIDSSD ITFAFKGNRF FQKCLEQPRC

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.