Factsheet for Zm00001d042810_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005791_P001
Zm00001d020584_P001
Zm00001d027974_P002
Zm00001d046662_P001
Zm00001d049167_P001
Zm00001d050298_P001
Zm00001d051478_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	Zm00001d020584_P001	AT1G07660.1	20706207
AT2G29680.1	Zm00001d027974_P002	AT2G02560.1	20706207
AT2G29680.1	Zm00001d046662_P001	AT2G02560.1	20706207
AT2G29680.1	Zm00001d049167_P001	AT2G02560.1	20706207
AT2G29680.1	Zm00001d050298_P001	AT2G02560.1	20706207
AT2G29680.1	Zm00001d005791_P001	AT3G46320.1	20706207
AT2G29680.1	Zm00001d051478_P001	AT3G53730.1	20706207
AT2G29680.1	Zm00001d005791_P001	AT5G59970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012320_P002	Maize	plastid	90.18	90.0
EES01777	Sorghum	plastid	84.46	83.94
TraesCS3B01G400900.1	Wheat	plastid	69.12	76.82
HORVU3Hr1G084800.19	Barley	plastid	70.35	73.82
Os01t0856000-02	Rice	nucleus, plastid	77.3	73.4
TraesCS3A01G369000.1	Wheat	plastid	74.44	72.95
TraesCS3D01G362000.1	Wheat	plastid	74.23	72.75
GSMUA_Achr6P33780_001	Banana	nucleus	53.17	52.74
KRG98340	Soybean	mitochondrion, plastid	50.31	51.9
KRH46438	Soybean	plastid	49.69	51.48
VIT_06s0004g06300.t01	Wine grape	plastid	50.1	48.61
CDY06693	Canola	nucleus	47.44	48.23
PGSC0003DMT400078033	Potato	cytosol	51.33	47.0
Solyc06g076860.2.1	Tomato	nucleus	51.12	46.99
AT1G07270.1	Thale cress	plastid	48.47	46.93
CDY02004	Canola	nucleus, plastid	47.85	46.89
Bra015569.1-P	Field mustard	nucleus	46.42	45.95
CDY10263	Canola	plastid	47.65	45.87
CDY71310	Canola	cytosol	14.72	45.57
CDX95747	Canola	plastid	49.28	45.22
AT2G29680.1	Thale cress	plastid	48.06	43.6
CDX94733	Canola	cytosol	11.04	36.99
Zm00001d045080_P001	Maize	plastid	22.09	13.2
Zm00001d037086_P006	Maize	nucleus, plastid	22.49	12.43

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.60	EntrezGene:100382678	MapMan:13.2.1.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:BT065033	UniProt:C0P9R4	InterPro:Cdc6/18	InterPro:Cdc6_C	GO:GO:0006139	GO:GO:0006259
GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051301
InterPro:IPR036388	ProteinID:ONM36343.1	ProteinID:ONM36346.1	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401
PIRSF:PIRSF001767	PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM00382	SMART:SM01074	SUPFAM:SSF46785
SUPFAM:SSF52540	UniParc:UPI000194B25C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d042810	EnsemblPlants:Zm00001d042810_P001
EnsemblPlants:Zm00001d042810_T001	:	:	:	:	:

Description

Cell division control protein 6 homolog B

Coordinates

chr3:-:180845237..180851262

Molecular Weight (calculated)

54579.5 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.221

Length

489 amino acids

Sequence
(BLAST)

001: MPTLRSATAN ASPMGTPLPA ETSTPRSVKR RLTPGRAGES PGASRHTSPH RHPHASTGPV HVPKMLSASP KSSRKRLYGD FVAAEKPKWN PRDAAQMRAV
101: KEALHVATVP SSELVCRDNE LRRVLEFCEA CVEQEKAGSL YVCGCPGTGK TLSINKIKDS LVCWGNETPD ALTINCTNLA NTSDIFGKML ETFQNRKKGR
201: NKLSPLHQLQ SMFSNKDSAP RRMMLVIVDE IDYLITRDRA VLHDLFMLTT CPFSRCILIG IANAIDLADR FLPKLESLNC KPLVVTFRAY SKDQISDIVK
301: HRLKVLEYDV FEPLALEFCA RKVAAASGDM RKALGVCRSA VEVLEARLHD FPDKELRIVT FDHMDIALSK AFKSAVVDSI LCLPQHQQMV LCALANTFQH
401: CKKKATTLGE PCFQLNKSYI EICRSTQVPA LGMIEFSNMC MVLSDQGFMK LGQSKEDKLR RVTLHIDSSD ITFAFKGNRF FQKCLEQRC

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.