Factsheet for PGSC0003DMT400078033

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400047304
PGSC0003DMT400079932

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	PGSC0003DMT400079932	AT2G31920.1	20706207
AT2G29680.1	PGSC0003DMT400047304	AT4G28230.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076860.2.1	Tomato	nucleus	96.82	97.18
VIT_06s0004g06300.t01	Wine grape	plastid	59.18	62.7
KRG98340	Soybean	mitochondrion, plastid	54.49	61.39
KRH46438	Soybean	plastid	53.56	60.59
TraesCS3B01G400900.1	Wheat	plastid	45.32	55.0
AT1G07270.1	Thale cress	plastid	51.69	54.65
CDY06693	Canola	nucleus	48.88	54.26
CDY02004	Canola	nucleus, plastid	50.0	53.51
EES01777	Sorghum	plastid	48.69	52.85
CDX95747	Canola	plastid	52.43	52.53
AT2G29680.1	Thale cress	plastid	52.81	52.32
Zm00001d012320_P002	Maize	plastid	47.94	52.24
CDY10263	Canola	plastid	49.63	52.17
GSMUA_Achr6P33780_001	Banana	nucleus	48.13	52.13
Bra015569.1-P	Field mustard	nucleus	48.13	52.02
HORVU3Hr1G084800.19	Barley	plastid	44.94	51.5
Zm00001d042810_P001	Maize	plastid	47.0	51.33
TraesCS3A01G369000.1	Wheat	plastid	46.63	49.9
TraesCS3D01G362000.1	Wheat	plastid	46.63	49.9
Os01t0856000-02	Rice	nucleus, plastid	47.75	49.51
CDY71310	Canola	cytosol	14.23	48.1
CDX94733	Canola	cytosol	11.98	43.84
PGSC0003DMT400033355	Potato	cytosol	3.37	19.78
PGSC0003DMT400033353	Potato	nucleus, plastid	16.67	11.9

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102586500	MapMan:13.2.1.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:Cdc6/18
InterPro:Cdc6_C	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009744
GO:GO:0009987	GO:GO:0051301	InterPro:IPR036388	UniProt:M1CZA2	InterPro:P-loop_NTPase	PFAM:PF09079
PFAM:PF13401	EnsemblPlantsGene:PGSC0003DMG400030351	PGSC:PGSC0003DMG400030351	EnsemblPlants:PGSC0003DMT400078033	PIRSF:PIRSF001767	PANTHER:PTHR10763
PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785	SUPFAM:SSF52540	UniParc:UPI000295DA46	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_006350829.1	SEG:seg	:	:	:

Description

Cdc6 [Source:PGSC_GENE;Acc:PGSC0003DMG400030351]

Coordinates

chr6:+:57135818..57142781

Molecular Weight (calculated)

59306.0 Da

IEP (calculated)

9.757

GRAVY (calculated)

-0.251

Length

534 amino acids

Sequence
(BLAST)

001: MPTIVDRRST RVSGGSKVAD PIAINGEIDS TPQKRKLRSS SSSTTEDSRV TSDLTPSPLK SSPSKWKSPR RCVNDSPKST PNANRGAKAV NLSKSPVKRR
101: LSESFLEKPM WNPRDMEQLN GVKEALHVSR APSNLVCREV ENNRILEFCK QAVEQEKAGS LYICGCPGTG KSLSMEKVNK VLVNWAEESG FQAPDTLSLN
201: CSSLSNTSDI FGKILDKIKL RRKINSCKSP LQYLQKMFSE KQQSAVTKML LIVADELDYL ITKDRAVLHE LFMLTTLPFS RFILIGIANA IDLADKFLPK
301: LQSLNCKPAV VTFRAYSKDQ IISILQQRLK AFPYTVFQPQ ALELCARKVA SASGDMRKAL WICRSAIEML ESDIRDSINS LDLPSLHGGV SDQQRDCACD
401: KALIHESNVV RVDHVAIALS KAYRSPVVDT IQSLPQHQQI ILCSAVKLFR GKKKDATIGE LNISYLDICK STLIPPAGIM ELSSMCRVLG DQGILKLGKA
501: REEKLSRVTL KVDEADITFA LQGIRFFRNC LQQS

Best Arabidopsis Sequence Match ( AT1G07270.1 )
(BLAST)

001: MPTNAGTSLS SYKHIVAIGT TVKSESLESA AYEIPRKRKM RSDSAAVSGN SVSTPKKLKS HLPSSVPNPG MSEKEVVEDS NEILRYPVNL AVSDCLGTKS
101: KWSPRDEEQM RAVKEALHVS KAPSTILCRE DEQIRIFEFV KGCIDQQKAG SLYICGCPGT GKSLSMEKVV QQVGDWSTQA GLPPVDTLSV NCTSLSKTTD
201: IFSKILGEIK PGKNANTNSS PLQHLQNLFS QKQESSSSRM MLIIADEMDY LITKDRGVLY DLFMLTTLPF SRCILIGVAN AIDLADRFLP KLKSLNCKPM
301: VITFRAYSKD QILRILQERL RVLSYVAFQP KALELCARKV AAASGDMRKA LCVCRSALEI LEIETRGSTG PESQGPTPDD SVVRMDHMAA ALSKTFKSPV
401: VETIQSLPQH QQIIICAAAK AFRGSKKDAT VGELNKLYLE ICKSWMISPA GITEFTNMCT VLNDQGILKV GQARRDKLKR VSLRVDESDI TFALQEIRFF
501: RNCLL

Arabidopsis Description

CDC6BCell division control protein 6 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8W032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.