CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01878
KRH10345
KRH13842
KRH24981
KRH30104
KRH30347
KRH32592
KRH43579
KRH51281
KRH62794
KRH75237

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29680.1	KRH32592	AT1G07660.1	20706207
AT2G29680.1	KRH01878	AT2G02560.1	20706207
AT2G29680.1	KRH51281	AT2G02560.1	20706207
AT2G29680.1	KRH75237	AT2G02560.1	20706207
AT2G29680.1	KRH13842	AT2G31920.1	20706207
AT2G29680.1	KRH43579	AT2G31920.1	20706207
AT2G29680.1	KRH30347	AT3G45930.1	20706207
AT2G29680.1	KRH10345	AT3G53730.1	20706207
AT2G29680.1	KRH24981	AT3G53730.1	20706207
AT2G29680.1	KRH30104	AT4G28230.1	20706207
AT2G29680.1	KRH62794	AT4G28230.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98340	Soybean	mitochondrion, plastid	93.64	93.25
VIT_06s0004g06300.t01	Wine grape	plastid	58.26	54.56
CDY02004	Canola	nucleus, plastid	56.99	53.91
PGSC0003DMT400078033	Potato	cytosol	60.59	53.56
Solyc06g076860.2.1	Tomato	nucleus	60.17	53.38
AT1G07270.1	Thale cress	plastid	56.78	53.07
TraesCS3B01G400900.1	Wheat	plastid	49.15	52.73
CDY06693	Canola	nucleus	53.6	52.6
Zm00001d012320_P002	Maize	plastid	53.39	51.43
AT2G29680.1	Thale cress	plastid	58.69	51.39
EES01777	Sorghum	plastid	52.75	50.61
CDX95747	Canola	plastid	56.99	50.47
Bra015569.1-P	Field mustard	nucleus	52.54	50.2
CDY10263	Canola	plastid	54.03	50.2
Zm00001d042810_P001	Maize	plastid	51.48	49.69
HORVU3Hr1G084800.19	Barley	plastid	48.94	49.57
CDX94733	Canola	cytosol	15.25	49.32
GSMUA_Achr6P33780_001	Banana	nucleus	51.27	49.09
Os01t0856000-02	Rice	nucleus, plastid	52.12	47.77
TraesCS3A01G369000.1	Wheat	plastid	50.42	47.7
TraesCS3D01G362000.1	Wheat	plastid	50.0	47.29
CDY71310	Canola	cytosol	15.68	46.84
KRH23133	Soybean	nucleus	22.25	12.34
KRH10202	Soybean	nucleus	21.61	11.94

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.2.1.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:ACUP02005344	InterPro:Cdc6/18
InterPro:Cdc6_C	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G333800	GO:GO:0006139	GO:GO:0006259	GO:GO:0006270
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051301	UniProt:I1KYU8
InterPro:IPR036388	EnsemblPlants:KRH46438	ProteinID:KRH46438	ProteinID:KRH46438.1	InterPro:P-loop_NTPase	PFAM:PF09079
PFAM:PF13401	PIRSF:PIRSF001767	PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785
SUPFAM:SSF52540	UniParc:UPI000296AC9A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:45114276..45119757

Molecular Weight (calculated)

52703.0 Da

IEP (calculated)

9.047

GRAVY (calculated)

-0.298

Length

472 amino acids

Sequence
(BLAST)

001: MPVIAAKRTL RSHPSSPPRK SPRRCTAATP NSTPTMNRFG ADENRADPEA VKPKWNPKDG EQLKRVKLAL HLSTAPSSVV CREEEQNVVL EFCKGCVEHQ
101: KAGSLYICGC PGTGKSLSME KVKDKLLNWA KEAGLPQPDV LSVNCTTFTN TSDIFTKILG LNQTQGKKVS ATPLQQLQNM YSQKSSNKNM TLIVADELDY
201: LITKDRGVLH DLFMLTTFPF SRCILIGVAN AIDLADRFLP RLTSLNCKPI VVNFRAYSKD QILKILEERL NELPYTVFQQ QAMELCARKV AAASGDMRNA
301: LCICGRAIEM LEAEIRESAC NLNTSLEEIS SSRQNLATAP DFMKKREFET VRTDHMARAL SKTYRSPVVD TIQSLPHHQQ IVLCSSMKHF RGAKKDTILG
401: ELYKSYVGVC KSCIIPPAGI LEFSNMCRVL NDQGLIKLGQ SREDKLRRVS PKVDEGDITF ALQGVRFFHN CL

Best Arabidopsis Sequence Match ( AT2G29680.2 )
(BLAST)

001: MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SKDQILRILQ ERLVALPFVA FQSNALEICA RKVSAASGDM RKALCVCRSA LEILEIEVRG SIDQEPKGPV PECQVVKMDH MIAALSKTFK
401: SPIVDTIQSL PQHQQIIVCS AAKAFRGSKK DRTIAELNKL YLEICKSSMI TPAGITEFSN MCTVLNDQGI LKLSLARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL

Arabidopsis Description

CDC6Cell division control protein 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:O82387]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.