Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28230.1 | KRH44391 | AT1G15570.1 | 21798944 |
| AT4G28230.1 | KRH47513 | AT1G15570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH62794 | Soybean | nucleus | 78.42 | 77.25 |
| CDX89193 | Canola | nucleus | 42.86 | 35.97 |
| CDY18994 | Canola | nucleus | 42.25 | 35.64 |
| AT4G28230.1 | Thale cress | nucleus | 43.47 | 35.57 |
| Bra026274.1-P | Field mustard | nucleus | 41.95 | 35.38 |
| PGSC0003DMT400047304 | Potato | nucleus | 46.81 | 32.56 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 45.9 | 32.4 |
| Solyc07g054690.1.1 | Tomato | extracellular | 46.5 | 32.35 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 31.31 | 27.61 |
Protein Annotations
| EMBL:ACUP02006873 | EnsemblPlants:KRH30104 | EnsemblPlantsGene:GLYMA_11G158800 | EntrezGene:102668024 | ncoils:Coil | PANTHER:PTHR36386 |
| ProteinID:KRH30104 | ProteinID:KRH30104.1 | SEG:seg | UniParc:UPI00023CBC66 | UniProt:I1LLH5 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr11:-:14209212..14210201
Molecular Weight (calculated)
36867.9 Da
IEP (calculated)
10.276
GRAVY (calculated)
-0.879
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDIQVWNNA AFDGNEEDSF LPMKTSWSSS ECTKENLSPP APDNLSFKKS TTATKKNPKG FGFGSDDNKN IDDEIEEIEL EIKRLTTRLD ALRLEKAKRG
101: KRVVMGRVVP AKFMEPRPSA VVSRKPEETP KTKVRVSSSS NNNNNAWRRG MSLGPNEIAA ATPATTLQSR RKSCFWKIPE IGEESRAKTT VGRVKKKEGN
201: SVIQVQGKRL FEKEKVKSVC ESGKKGLLKQ GRMVASRYNS DVRKRSLPEG GTEIRVKKRW EIPKNGEEEA EAVAVMLPKI KMVKCLNESP RDSGAAKRVA
301: ELGGRRSYFN TDEKDVCQIL NFAEEEEGQ
101: KRVVMGRVVP AKFMEPRPSA VVSRKPEETP KTKVRVSSSS NNNNNAWRRG MSLGPNEIAA ATPATTLQSR RKSCFWKIPE IGEESRAKTT VGRVKKKEGN
201: SVIQVQGKRL FEKEKVKSVC ESGKKGLLKQ GRMVASRYNS DVRKRSLPEG GTEIRVKKRW EIPKNGEEEA EAVAVMLPKI KMVKCLNESP RDSGAAKRVA
301: ELGGRRSYFN TDEKDVCQIL NFAEEEEGQ
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.