Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89193 | Canola | nucleus | 96.41 | 95.92 |
| AT4G28230.1 | Thale cress | nucleus | 75.64 | 73.38 |
| KRH30104 | Soybean | nucleus | 35.64 | 42.25 |
| VIT_12s0057g00240.t01 | Wine grape | nucleus | 49.23 | 41.2 |
| KRH62794 | Soybean | nucleus | 35.13 | 41.02 |
| Solyc07g054690.1.1 | Tomato | extracellular | 47.18 | 38.9 |
| PGSC0003DMT400047304 | Potato | nucleus | 46.92 | 38.69 |
| GSMUA_Achr3P22960_001 | Banana | nucleus | 29.49 | 30.83 |
Protein Annotations
| EnsemblPlants:CDY18994 | EnsemblPlantsGene:GSBRNA2T00006232001 | ncoils:Coil | PANTHER:PTHR36386 | ProteinID:CDY18994 | ProteinID:CDY18994.1 |
| SEG:seg | UniParc:UPI0004EF3820 | UniProt:A0A078G0H3 | MapMan:35.2 | : | : |
Description
BnaC01g20740DBnaC01g20740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0H3]
Coordinates
chrLK032091:+:225800..226972
Molecular Weight (calculated)
43478.5 Da
IEP (calculated)
10.521
GRAVY (calculated)
-0.910
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTEHTETL NAPELQIWNN AAFDDGDSNL TTAIEASWSN LNASFDSDCS KENQIPVSVS SSLKSSVSFS TDDPIRSGKV KEKPHKTVKA KHADIDAEIE
101: EVEKEMNRLS IRLESLRLEK AEQIARSIAI RGRIVPAKFM ASQKPTVKFD TGVKPRTTPR KGVSLGPGEI YSAATKSETV TPLQSAQNRR KSCFFKLPGI
201: EEGKKAVTKG RGRSLSPRSR KAKMTAAAQK QAATTGGSKR AVKKEESVLS SIQPKKLFKE EEKRKPLKPG RVVASRYSLM SKTAEKDARK RSLPENEEKE
301: NHRSEKRRAS DENRKSEGRV KKRWEIPSEV EVYCSGVSDE TPIGKDLPKI RTLRGRVGES PRDSGAAKRV SELESKNRDF TFCQLLRFEE
101: EVEKEMNRLS IRLESLRLEK AEQIARSIAI RGRIVPAKFM ASQKPTVKFD TGVKPRTTPR KGVSLGPGEI YSAATKSETV TPLQSAQNRR KSCFFKLPGI
201: EEGKKAVTKG RGRSLSPRSR KAKMTAAAQK QAATTGGSKR AVKKEESVLS SIQPKKLFKE EEKRKPLKPG RVVASRYSLM SKTAEKDARK RSLPENEEKE
301: NHRSEKRRAS DENRKSEGRV KKRWEIPSEV EVYCSGVSDE TPIGKDLPKI RTLRGRVGES PRDSGAAKRV SELESKNRDF TFCQLLRFEE
001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE
Arabidopsis Description
At4g28230 [Source:UniProtKB/TrEMBL;Acc:Q9M0I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.