Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026756.1-P | Field mustard | plastid | 95.29 | 93.89 |
| CDY53304 | Canola | plastid | 95.04 | 93.64 |
| CDY66415 | Canola | nucleus | 85.36 | 79.26 |
| CDY36574 | Canola | mitochondrion, nucleus | 84.86 | 78.44 |
| CDX96836 | Canola | nucleus, plastid | 82.63 | 75.68 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 80.15 | 71.78 |
| CDY48212 | Canola | nucleus | 63.52 | 67.9 |
| CDY61993 | Canola | nucleus | 62.78 | 67.11 |
| CDX67944 | Canola | plastid | 67.49 | 62.96 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 37.97 | 61.94 |
| CDX79389 | Canola | plastid | 66.0 | 61.43 |
| CDY38664 | Canola | nucleus, plastid | 68.98 | 61.1 |
| CDY37592 | Canola | mitochondrion, plastid | 69.23 | 61.05 |
| CDY39984 | Canola | plastid | 66.5 | 59.82 |
| CDX87305 | Canola | plastid | 68.49 | 59.74 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 61.79 | 50.82 |
| KRH47513 | Soybean | nucleus | 57.57 | 48.74 |
| CDY06752 | Canola | nucleus | 33.99 | 48.07 |
| KRH44391 | Soybean | nucleus | 54.34 | 46.5 |
| CDX87087 | Canola | plastid | 47.64 | 46.04 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 51.86 | 45.63 |
| CDX97090 | Canola | nucleus | 49.13 | 45.41 |
| PGSC0003DMT400006576 | Potato | nucleus | 51.86 | 45.14 |
| CDX69768 | Canola | nucleus, plastid | 48.39 | 44.62 |
| CDY22369 | Canola | nucleus | 38.46 | 44.16 |
| CDY17091 | Canola | nucleus | 38.21 | 43.02 |
| CDY17037 | Canola | nucleus, plastid | 38.21 | 42.31 |
| Os12t0502300-01 | Rice | nucleus, plastid | 51.36 | 42.24 |
| CDY47595 | Canola | nucleus, plastid | 38.46 | 41.78 |
| OQU77084 | Sorghum | nucleus | 50.37 | 41.6 |
| CDY23653 | Canola | nucleus | 36.72 | 41.46 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 21.59 | 41.23 |
| CDY66770 | Canola | nucleus | 36.97 | 41.16 |
| CDX88368 | Canola | plastid | 38.71 | 41.05 |
| TraesCSU01G054300.1 | Wheat | nucleus | 50.37 | 40.52 |
| CDY06757 | Canola | nucleus, plastid | 36.48 | 40.5 |
| CDY47596 | Canola | nucleus | 36.23 | 40.22 |
| TraesCS3D01G529100.1 | Wheat | plastid | 50.37 | 40.2 |
| TraesCS3A01G523600.1 | Wheat | plastid | 50.37 | 40.04 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 53.85 | 40.04 |
| KXG23504 | Sorghum | mitochondrion, nucleus | 47.89 | 39.96 |
| CDY17039 | Canola | nucleus | 35.98 | 39.94 |
| CDX87520 | Canola | nucleus | 38.21 | 39.9 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 50.12 | 39.84 |
| CDY41784 | Canola | plastid | 33.5 | 39.71 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 47.15 | 39.18 |
| TraesCS5D01G121100.2 | Wheat | plastid | 49.38 | 39.17 |
| TraesCS5B01G114300.2 | Wheat | plastid | 49.13 | 39.05 |
| TraesCS5A01G108500.2 | Wheat | plastid | 48.88 | 38.78 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 50.12 | 38.77 |
| CDX85466 | Canola | plastid | 40.45 | 38.63 |
| CDY02719 | Canola | plastid | 40.2 | 37.76 |
| CDX92090 | Canola | mitochondrion, nucleus | 32.26 | 36.41 |
| CDY65994 | Canola | plastid | 38.71 | 35.21 |
| CDY25649 | Canola | plastid | 37.97 | 35.01 |
| CDY31481 | Canola | nucleus | 18.61 | 34.56 |
| CDY62475 | Canola | nucleus | 24.81 | 28.49 |
| CDX96631 | Canola | nucleus | 28.78 | 28.29 |
| CDY33634 | Canola | nucleus | 28.54 | 28.19 |
| CDY69551 | Canola | nucleus | 24.81 | 28.17 |
| CDX72551 | Canola | nucleus | 27.54 | 27.68 |
| CDY29520 | Canola | nucleus | 28.04 | 27.56 |
| CDY26816 | Canola | nucleus | 27.79 | 27.52 |
| CDY29184 | Canola | nucleus | 28.29 | 27.21 |
| CDY30357 | Canola | nucleus | 27.54 | 27.14 |
| CDY67210 | Canola | nucleus | 27.3 | 27.09 |
| CDY07838 | Canola | nucleus | 28.04 | 27.03 |
| CDX85942 | Canola | nucleus | 27.3 | 26.96 |
| CDX88261 | Canola | nucleus | 28.04 | 26.28 |
| CDX87612 | Canola | nucleus | 28.04 | 26.22 |
| CDX69311 | Canola | nucleus | 26.3 | 25.3 |
| CDX80988 | Canola | plastid | 26.8 | 25.23 |
| CDX68105 | Canola | nucleus | 24.57 | 25.06 |
| CDY11354 | Canola | plastid | 26.8 | 24.94 |
| CDX75659 | Canola | nucleus | 26.3 | 24.77 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 47.89 | 19.51 |
| CDY33338 | Canola | nucleus | 25.56 | 17.64 |
| CDY14091 | Canola | plastid | 27.05 | 16.62 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 25.06 | 16.58 |
| CDX96819 | Canola | nucleus | 25.31 | 15.81 |
| CDY04980 | Canola | nucleus | 27.3 | 15.32 |
| CDX83953 | Canola | nucleus | 24.81 | 15.27 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | GO:A0A078CY49 | EnsemblPlants:CDX81722 | ProteinID:CDX81722 | ProteinID:CDX81722.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00136648001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF346 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EEA976 |
Description
BnaC08g38790D
Coordinates
chrLK031826:+:485382..487247
Molecular Weight (calculated)
45891.1 Da
IEP (calculated)
8.526
GRAVY (calculated)
-0.287
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKENAVSRP FTRAFASALR ASTTHNQQRA NRKRPASEED KNITAPTFNK KKKKRAVLGD ISNVGFNAAK LEAKNIIKQV KKESVDTSEV TDLQSKTHAK
101: AEGVSNYTAD NCKSDVIGSS TALDIPKVIN IDSDDNDPLL CCLYAPEIYH NLRVSELKRR PVPEVTQKDV THSMRGILVD WLVEVSEEYT LVPDTLYLTV
201: YLIDWFLHGN HIERQNLQLL GITCMLIASK YEEICAPRVE EFCLMTDNTY ARDQVLEMEN QVLAHFSFQI YTPTPKTFLR RFLRAASSYL SQRRLELEFL
301: ASYLTELTLI DCRFLKFLPS VIAASAVFLA KWTLDQSNHP WNLTLEHYTT YKTSDLKASV HALQDLQLNT RGCPLGAIRM KYRQEKFKSV AVLISPKLLD
401: TLF
101: AEGVSNYTAD NCKSDVIGSS TALDIPKVIN IDSDDNDPLL CCLYAPEIYH NLRVSELKRR PVPEVTQKDV THSMRGILVD WLVEVSEEYT LVPDTLYLTV
201: YLIDWFLHGN HIERQNLQLL GITCMLIASK YEEICAPRVE EFCLMTDNTY ARDQVLEMEN QVLAHFSFQI YTPTPKTFLR RFLRAASSYL SQRRLELEFL
301: ASYLTELTLI DCRFLKFLPS VIAASAVFLA KWTLDQSNHP WNLTLEHYTT YKTSDLKASV HALQDLQLNT RGCPLGAIRM KYRQEKFKSV AVLISPKLLD
401: TLF
001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF
Arabidopsis Description
CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.