Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075380 | Potato | nucleus | 68.2 | 62.45 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 73.27 | 60.0 |
| CDY29520 | Canola | nucleus | 90.32 | 47.8 |
| CDX96631 | Canola | nucleus | 89.86 | 47.56 |
| CDY33634 | Canola | nucleus | 89.4 | 47.55 |
| AT1G20610.1 | Thale cress | nucleus | 89.86 | 45.45 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 57.14 | 44.6 |
| CDX85942 | Canola | nucleus | 82.03 | 43.63 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 43.32 | 43.32 |
| CDX68105 | Canola | nucleus | 77.88 | 42.78 |
| CDX88261 | Canola | nucleus | 81.11 | 40.93 |
| CDX87612 | Canola | nucleus | 81.11 | 40.84 |
| Solyc04g082430.2.1 | Tomato | nucleus | 70.51 | 38.93 |
| GSMUA_Achr11P... | Banana | nucleus | 70.51 | 37.5 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 69.59 | 35.95 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 70.05 | 35.85 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 72.81 | 35.83 |
| Os06t0726800-01 | Rice | nucleus | 68.66 | 35.56 |
| KRH60628 | Soybean | nucleus | 66.36 | 35.56 |
| CDY30357 | Canola | nucleus | 66.82 | 35.45 |
| CDY26816 | Canola | nucleus | 66.36 | 35.38 |
| KRH51329 | Soybean | nucleus, plastid | 67.28 | 35.18 |
| CDX72551 | Canola | nucleus | 64.98 | 35.16 |
| Zm00001d036360_P002 | Maize | nucleus | 68.66 | 35.14 |
| Solyc12g094600.1.1 | Tomato | nucleus | 68.66 | 35.06 |
| Os04t0563700-01 | Rice | mitochondrion | 67.74 | 35.0 |
| KXG20945 | Sorghum | nucleus | 68.2 | 34.91 |
| PGSC0003DMT400025854 | Potato | nucleus | 70.51 | 34.69 |
| CDY67210 | Canola | nucleus | 64.52 | 34.48 |
| Zm00001d026129_P001 | Maize | nucleus | 66.82 | 34.04 |
| CDY29184 | Canola | nucleus | 64.98 | 33.65 |
| EES12664 | Sorghum | nucleus | 66.82 | 33.56 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 64.52 | 33.41 |
| CDY07838 | Canola | nucleus | 64.06 | 33.25 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 64.06 | 33.17 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 63.13 | 32.7 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 63.13 | 32.62 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 60.83 | 32.59 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 60.37 | 32.03 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 60.83 | 31.35 |
| Zm00001d002662_P010 | Maize | nucleus | 65.44 | 31.21 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 27.19 | 27.96 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 60.37 | 27.81 |
| CDY06752 | Canola | nucleus | 36.41 | 27.72 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 71.89 | 23.35 |
| CDY62475 | Canola | nucleus | 37.33 | 23.08 |
| CDY69551 | Canola | nucleus | 37.33 | 22.82 |
| CDY22369 | Canola | nucleus | 36.41 | 22.51 |
| CDY17091 | Canola | nucleus | 36.87 | 22.35 |
| CDY06757 | Canola | nucleus, plastid | 36.87 | 22.04 |
| CDY17037 | Canola | nucleus, plastid | 36.87 | 21.98 |
| CDX80988 | Canola | plastid | 43.32 | 21.96 |
| CDY66770 | Canola | nucleus | 36.41 | 21.82 |
| CDY11354 | Canola | plastid | 43.32 | 21.71 |
| CDY47595 | Canola | nucleus, plastid | 36.87 | 21.56 |
| CDY47596 | Canola | nucleus | 35.94 | 21.49 |
| CDY17039 | Canola | nucleus | 35.94 | 21.49 |
| CDX69311 | Canola | nucleus | 41.47 | 21.48 |
| CDY23653 | Canola | nucleus | 35.02 | 21.29 |
| CDX75659 | Canola | nucleus | 41.47 | 21.03 |
| CDY61993 | Canola | nucleus | 35.94 | 20.69 |
| CDY48212 | Canola | nucleus | 35.94 | 20.69 |
| CDX88368 | Canola | plastid | 35.94 | 20.53 |
| CDX87520 | Canola | nucleus | 36.41 | 20.47 |
| CDX85466 | Canola | plastid | 39.63 | 20.38 |
| CDY02719 | Canola | plastid | 39.63 | 20.05 |
| CDX97090 | Canola | nucleus | 40.09 | 19.95 |
| CDX92090 | Canola | mitochondrion, nucleus | 32.72 | 19.89 |
| CDX87087 | Canola | plastid | 37.79 | 19.66 |
| CDX69768 | Canola | nucleus, plastid | 39.17 | 19.45 |
| CDY41784 | Canola | plastid | 30.41 | 19.41 |
| CDY53304 | Canola | plastid | 35.94 | 19.07 |
| CDY25649 | Canola | plastid | 38.25 | 18.99 |
| CDX67944 | Canola | plastid | 37.79 | 18.98 |
| CDY65994 | Canola | plastid | 38.71 | 18.96 |
| CDX79389 | Canola | plastid | 37.79 | 18.94 |
| CDX81722 | Canola | nucleus, plastid | 34.56 | 18.61 |
| CDX96836 | Canola | nucleus, plastid | 37.33 | 18.41 |
| CDY37592 | Canola | mitochondrion, plastid | 38.25 | 18.16 |
| CDY36574 | Canola | mitochondrion, nucleus | 36.41 | 18.12 |
| CDY38664 | Canola | nucleus, plastid | 37.79 | 18.02 |
| CDY66415 | Canola | nucleus | 35.48 | 17.74 |
| CDY39984 | Canola | plastid | 36.41 | 17.63 |
| CDY33338 | Canola | nucleus | 45.62 | 16.95 |
| CDX87305 | Canola | plastid | 35.94 | 16.88 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 45.62 | 16.26 |
| CDX96819 | Canola | nucleus | 44.7 | 15.04 |
| CDX83953 | Canola | nucleus | 44.24 | 14.66 |
| CDY14091 | Canola | plastid | 43.32 | 14.33 |
| CDY04980 | Canola | nucleus | 43.32 | 13.09 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 37.79 | 8.29 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:35.1 | GO:A0A078H138 | UniProt:A0A078H138 | EnsemblPlants:CDY31481 | ProteinID:CDY31481 |
| ProteinID:CDY31481.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00047759001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF350 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EEDAA9 | : | : | : | : | : |
Description
BnaC05g15900DBnaC05g15900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H138]
Coordinates
chrLK032273:-:167555..168968
Molecular Weight (calculated)
24955.7 Da
IEP (calculated)
9.146
GRAVY (calculated)
0.012
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSQQDLNER MRGILIDWKP FYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYTRREV LDMEKLIANT LQFNFSLPTP
101: YVFMKRFLKA SQSDKKVEVL SFFIIELCLV EYEMLDFCKL AASAIYTAQC TLKGFQEWGK TCEFHTGYKE EQLLACARKM VGFHHKAGTG KLTGVHRKYN
201: TSKFSYAART KPAGFLL
101: YVFMKRFLKA SQSDKKVEVL SFFIIELCLV EYEMLDFCKL AASAIYTAQC TLKGFQEWGK TCEFHTGYKE EQLLACARKM VGFHHKAGTG KLTGVHRKYN
201: TSKFSYAART KPAGFLL
001: MNYSNNYIEH QNKKKTIIIF FRQFKKQKPM LRMGVHLVVI NKNTFNFFNR QNNYFNSGKT KKIFVIDRFL AVHQIVRKKL QLVGVTALLL ACKYEEVSVP
101: VVDDLILISD KAYSRREVLD MEKLMANTLQ FNFSLPTPYV FMKRFLKAAQ SDKKLEILSF FMIELCLVEY EMLEYLPSKL AASAIYTAQC TLKGFEEWSK
201: TCEFHTGYNE EQLLACARKM VAFHHKAGTG KLTGSTTHLS SFMLQEVNQL GFCFKGGKNY NKNLI
101: VVDDLILISD KAYSRREVLD MEKLMANTLQ FNFSLPTPYV FMKRFLKAAQ SDKKLEILSF FMIELCLVEY EMLEYLPSKL AASAIYTAQC TLKGFEEWSK
201: TCEFHTGYNE EQLLACARKM VAFHHKAGTG KLTGSTTHLS SFMLQEVNQL GFCFKGGKNY NKNLI
Arabidopsis Description
CYCB2-5Cyclin-B2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM91]
SUBAcon: [golgi,plastid,nucleus,cytosol]
SUBAcon: [golgi,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.