Factsheet for VIT_18s0001g14170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0150g00120.t01
VIT_02s0087g00770.t01
VIT_03s0017g00150.t01
VIT_05s0020g04950.t01
VIT_06s0061g00810.t01
VIT_07s0005g03000.t01
VIT_14s0068g02140.t01
VIT_16s0050g00030.t01
VIT_17s0000g00210.t01
VIT_18s0001g12630.t01
VIT_18s0076g00330.t01
VIT_18s0089g00210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20590.1	VIT_02s0087g00770.t01	AT4G19210.1	20706207
AT1G20590.1	VIT_16s0050g00030.t01	AT4G25550.1	20706207
AT1G20610.1	VIT_18s0001g12630.t01	AT1G19520.1	20706207
AT1G20610.1	VIT_18s0076g00330.t01	AT1G43700.1	20706207
AT1G20610.1	VIT_05s0020g04950.t01	AT1G56290.1	20706207
AT1G20610.1	VIT_18s0089g00210.t01	AT1G71380.1	20706207
AT1G20610.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT1G20610.1	VIT_03s0017g00150.t01	AT3G11270.1	20706207
AT1G20610.1	VIT_07s0005g03000.t01	AT3G11270.1	20706207
AT1G20610.1	VIT_17s0000g00210.t01	AT5G07300.1	20706207
AT1G20610.1	VIT_01s0150g00120.t01	AT5G13330.1	20706207
AT1G20610.1	VIT_14s0068g02140.t01	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075380	Potato	nucleus	40.82	75.95
CDY31481	Canola	nucleus	35.83	72.81
Solyc04g082430.2.1	Tomato	nucleus	62.81	70.48
PGSC0003DMT400025854	Potato	nucleus	68.71	68.71
Bra003727.1-P	Field mustard	nucleus	58.96	67.89
Bra015762.1-P	Field mustard	nucleus	65.76	67.29
CDX87612	Canola	nucleus	65.53	67.05
CDX85942	Canola	nucleus	61.9	66.91
CDX88261	Canola	nucleus	65.08	66.74
CDX96631	Canola	nucleus	61.9	66.59
CDY33634	Canola	nucleus	61.45	66.42
Bra016460.1-P	Field mustard	nucleus	61.68	66.34
CDX68105	Canola	nucleus	58.96	65.82
Solyc12g094600.1.1	Tomato	nucleus	63.04	65.41
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	62.59	65.09
GSMUA_Achr5P19270_001	Banana	cytosol	31.97	64.98
AT1G20610.1	Thale cress	nucleus	62.59	64.34
Bra025831.1-P	Field mustard	nucleus	58.5	62.93
CDY29520	Canola	nucleus	58.28	62.68
Os06t0726800-01	Rice	nucleus	59.18	62.29
AT1G76310.3	Thale cress	nucleus	64.17	61.66
KXG20945	Sorghum	nucleus	59.18	61.56
GSMUA_Achr5P19110_001	Banana	nucleus	58.96	61.32
GSMUA_Achr8P13320_001	Banana	nucleus	58.28	61.19
GSMUA_Achr11P...	Banana	nucleus	56.24	60.78
Zm00001d036360_P002	Maize	nucleus	58.05	60.38
TraesCS7A01G549500.1	Wheat	nucleus	57.14	60.14
TraesCS7D01G536000.1	Wheat	nucleus	56.92	59.9
TraesCS7B01G472800.1	Wheat	nucleus	56.92	59.9
HORVU7Hr1G121820.6	Barley	nucleus	56.24	59.05
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	34.24	56.98
Os04t0563700-01	Rice	mitochondrion	54.2	56.9
TraesCS2A01G404800.1	Wheat	nucleus	51.93	56.54
TraesCS2B01G422800.1	Wheat	nucleus	52.15	56.23
TraesCS2D01G401700.1	Wheat	nucleus, plastid	52.83	55.34
EES12664	Sorghum	nucleus	53.74	54.86
Zm00001d026129_P001	Maize	nucleus	52.15	53.99
HORVU0Hr1G022770.1	Barley	nucleus, plastid	34.01	53.96
Zm00001d002662_P010	Maize	nucleus	52.83	51.21
HORVU2Hr1G096070.2	Barley	nucleus	52.38	49.04
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	58.5	38.62
VIT_06s0009g02090.t01	Wine grape	nucleus	35.83	37.8
VIT_08s0040g00930.t01	Wine grape	nucleus	37.87	36.87
VIT_13s0067g01420.t01	Wine grape	nucleus	36.28	34.63
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	27.44	30.17
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	24.94	30.14
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	25.17	30.0
VIT_03s0091g00280.t01	Wine grape	nucleus	22.9	29.62
VIT_19s0085g00690.t01	Wine grape	nucleus	37.19	27.15
VIT_09s0002g05240.t01	Wine grape	nucleus	29.25	26.33
VIT_18s0001g02060.t01	Wine grape	plastid	28.12	25.05

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100267672	wikigene:100267672	MapMan:13.1.1.1.2	ProteinID:CBI19854	ProteinID:CBI19854.3
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:E0CQ49	EMBL:FN595227
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EntrezGene:LOC100267672	wikigene:LOC100267672	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF336	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00015C7673
ArrayExpress:VIT_18s0001g14170	EnsemblPlantsGene:VIT_18s0001g14170	EnsemblPlants:VIT_18s0001g14170.t01	RefSeq:XP_002280079	RefSeq:XP_002280079.2	RefSeq:XP_010664803.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:12212398..12215228

Molecular Weight (calculated)

49915.3 Da

IEP (calculated)

5.863

GRAVY (calculated)

-0.250

Length

441 amino acids

Sequence
(BLAST)

001: MVGTDENNPG VGVIGPANNQ GGLRAGVGKF TTGIGHNRRA LSSIDRNIIG VPPYPCAVNK RALSEKEAAC DKKHPPIPMH RPITRKFAAQ MASNKQQRAA
101: IPEESRKLVL QSAPSELKDC VFVDAEDCKG TSDLPVPMSV QHTEAMLEEI DRMEEEIEME DLVKEPVMDI DGSDNKNSLA VVEYIDEIYA YYRKTESSSC
201: VSPDYMSQQF DINDRMRGIL IDWLIEVHYK FELMDETLYL TVNLIDRFLA LQPVVRKKLQ LVGVTAMLLA CKYEEVTVPI VEDLILISDK AYSRKEVLDM
301: EKLMVNTLQF NMSVPTPYVF MRRFLKAAQS DKKLELLSFF IIELCLVEYE MLKFSPSLLA AAAIFTAQCT LNGSKHWSRT CEWYTRYTEE QLLECSRLMV
401: SFHQQAGTGK LTGVHRKYST SKFGHTAKSE PAHFLVEERP S

Best Arabidopsis Sequence Match ( AT1G76310.1 )
(BLAST)

001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L

Arabidopsis Description

CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.