Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g02190.t01 | |
| VIT_19s0015g01290.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16330.1 | VIT_07s0005g02190.t01 | AT3G62240.1 | 20706207 |
| AT1G16330.1 | VIT_19s0015g01290.t01 | AT5G23810.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026065.1-P | Field mustard | nucleus | 40.56 | 48.42 |
| CDY33338 | Canola | nucleus | 42.88 | 44.35 |
| AT1G16330.1 | Thale cress | nucleus | 46.69 | 43.52 |
| CDX96819 | Canola | nucleus | 46.19 | 43.26 |
| KRH44849 | Soybean | nucleus | 52.48 | 42.78 |
| CDX83953 | Canola | nucleus | 46.03 | 42.44 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 42.38 | 42.04 |
| Bra016640.1-P | Field mustard | nucleus | 45.53 | 41.98 |
| Solyc07g066660.2.1 | Tomato | nucleus | 49.17 | 40.19 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 27.15 | 37.19 |
| VIT_03s0038g02800.t01 | Wine grape | nucleus, plastid | 25.17 | 35.85 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 24.17 | 34.93 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 25.83 | 34.44 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 23.84 | 31.17 |
| VIT_04s0008g04260.t01 | Wine grape | nucleus, plastid | 18.87 | 28.43 |
| VIT_18s0001g02080.t01 | Wine grape | nucleus, plastid | 16.89 | 27.57 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 15.23 | 26.98 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 15.73 | 26.03 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 20.7 | 25.51 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 18.87 | 23.03 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | ProteinID:CBI24160 | ProteinID:CBI24160.3 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | UniProt:D7T0U0 | EMBL:FN595503 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF222 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0001BE2735 | ArrayExpress:VIT_19s0085g00690 |
| EnsemblPlantsGene:VIT_19s0085g00690 | EnsemblPlants:VIT_19s0085g00690.t01 | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:23135251..23145621
Molecular Weight (calculated)
68256.3 Da
IEP (calculated)
10.419
GRAVY (calculated)
-0.509
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAVKGKLNA APSRVAGDKK NRKSVGLSFK VYSENERVNV GSRDSVGTSS TRKSVQFNKG TVQSNSSDSK GNLKSFEKDK DKRNSSFVRR KALADVSNVQ
101: GNCSTTSMRD GSKSVVTLGQ GTITVCASSR KPSMGKMGTN ISQGAGVCNT SKRASAKNLK ASSNNQMTKD KGRESVNNAQ RTARLSHVLT RKSLPVIRRV
201: NKVDRSDLKL FELFLYFIEI QPTLRTTVKT SNVQTQRTLK SKRTSVLDKS ISGAAISSKN KEKLVPSSLP ESIGFVGPYQ PAQGELPPDG NASTSTNTSD
301: INNRRKSDRR RSFTLSLMTR SKQLEEHGEF RKLEKLPSID DNCNHLEVAE YVEEIYQYYW VTEAQNPSMQ NYMSIQSDIT PQMRGILINW LIEVHYKFEL
401: MQETLYLMVT LFDRYLSLVP IKKNDMQLVG LTALLLASKY EDFWHPRVKD LISISAESYT RDQMLGMEKV VLNKLKFRLN VPTPYVFMMR FLKAAQSDKR
501: LEHLAFYLIE LCLVEYEALK YKPSLLCASA IYLARCTLQR APAWTPLLHK HARYEESQIR DCAEMILKFQ KAARTGQLKV TYEKYMRPDQ SGVAAITPLN
601: RLPR
101: GNCSTTSMRD GSKSVVTLGQ GTITVCASSR KPSMGKMGTN ISQGAGVCNT SKRASAKNLK ASSNNQMTKD KGRESVNNAQ RTARLSHVLT RKSLPVIRRV
201: NKVDRSDLKL FELFLYFIEI QPTLRTTVKT SNVQTQRTLK SKRTSVLDKS ISGAAISSKN KEKLVPSSLP ESIGFVGPYQ PAQGELPPDG NASTSTNTSD
301: INNRRKSDRR RSFTLSLMTR SKQLEEHGEF RKLEKLPSID DNCNHLEVAE YVEEIYQYYW VTEAQNPSMQ NYMSIQSDIT PQMRGILINW LIEVHYKFEL
401: MQETLYLMVT LFDRYLSLVP IKKNDMQLVG LTALLLASKY EDFWHPRVKD LISISAESYT RDQMLGMEKV VLNKLKFRLN VPTPYVFMMR FLKAAQSDKR
501: LEHLAFYLIE LCLVEYEALK YKPSLLCASA IYLARCTLQR APAWTPLLHK HARYEESQIR DCAEMILKFQ KAARTGQLKV TYEKYMRPDQ SGVAAITPLN
601: RLPR
001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
Arabidopsis Description
CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.