Factsheet for VIT_18s0001g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0237100-01	Rice	extracellular	33.78	63.45
Zm00001d032128_P001	Maize	cytosol	24.86	58.23
TraesCS1B01G151800.3	Wheat	nucleus	52.16	54.37
VIT_18s0001g02060.t01	Wine grape	plastid	71.62	53.54
Solyc11g005090.1.1	Tomato	plastid	69.73	52.65
Os12t0298950-00	Rice	nucleus	62.43	51.68
PGSC0003DMT400015424	Potato	plastid	65.14	51.06
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	63.24	46.61
Os01t0233100-00	Rice	nucleus, plastid	61.62	46.44
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	62.16	46.0
Os01t0233500-01	Rice	nucleus, plastid	62.7	45.67
TraesCS3D01G164600.1	Wheat	plastid	62.43	45.29
TraesCS3B01G183400.1	Wheat	plastid	62.16	45.1
TraesCS3A01G157000.1	Wheat	plastid	62.43	45.03
Zm00001d040381_P001	Maize	plastid	63.78	44.28
TraesCS1D01G134100.2	Wheat	nucleus, plastid	54.59	42.35
KXG21616	Sorghum	nucleus, plastid	53.51	41.34
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	40.54	41.1
Zm00001d021353_P002	Maize	mitochondrion, nucleus	22.16	41.0
Zm00001d009011_P001	Maize	nucleus, plastid	56.22	40.78
VIT_03s0091g00280.t01	Wine grape	nucleus	36.49	39.59
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	42.43	39.15
TraesCS1A01G138300.1	Wheat	nucleus, plastid	51.08	36.0
Zm00001d010404_P001	Maize	nucleus	42.16	32.16
VIT_09s0002g05240.t01	Wine grape	nucleus	42.43	32.04
VIT_06s0009g02090.t01	Wine grape	nucleus	32.16	28.47
VIT_18s0001g14170.t01	Wine grape	nucleus	30.0	25.17
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	28.65	25.0
VIT_08s0040g00930.t01	Wine grape	nucleus	28.92	23.62
VIT_13s0067g01420.t01	Wine grape	nucleus	28.92	23.16
VIT_19s0085g00690.t01	Wine grape	nucleus	27.57	16.89

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100255774	wikigene:100255774	MapMan:13.1.1.1.1	ProteinID:CCB45466	ProteinID:CCB45466.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	UniProt:F6H0J4	EMBL:FN595227
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EntrezGene:LOC100255774	wikigene:LOC100255774
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002109D32	ArrayExpress:VIT_18s0001g02080	EnsemblPlantsGene:VIT_18s0001g02080
EnsemblPlants:VIT_18s0001g02080.t01	RefSeq:XP_002284561	RefSeq:XP_002284561.1	:	:	:

Description

No Description!

Coordinates

chr18:-:2485740..2489654

Molecular Weight (calculated)

41866.3 Da

IEP (calculated)

5.570

GRAVY (calculated)

-0.133

Length

370 amino acids

Sequence
(BLAST)

001: MVSVLSAPRT MGVSPSQSDG SVSLDETMST CDSLKSPEFE YINNHDASPV SFVETKTGTC LHLSKHVEIT GNICKGDVEV ETIDKIVNVD KNFLDPRFYA
101: AIDCDIYSNL RASEAKKRPS IDFMERVQKD INPSMRAILI DWLVEVAEEY RLAPDTLFLT VNYIDRYLSG NVMNRKQLQL LGIACMMIAA KYEEICALQV
201: AEFCYITDNT YSKEEVLQME SAVLNYLKFE MTVPTTKCFL RQFIHAAQGN NKDPSLQLEC LASYLTELSL LEYNMLCYAP SLIAASATFL ARFILFSAEK
301: PWNSMLGHYT HYLPSHLHDC VKALHHLCCN NHGSGLPAIK EKYSQHKYKF VAKKYCPPCV PPEFFEDPSD

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.