CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG30293
KXG36804

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	KXG30293	AT5G07300.1	20706207
AT1G44110.1	KXG36804	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010404_P001	Maize	nucleus	77.24	76.29
Os05t0237100-01	Rice	extracellular	29.23	71.07
TraesCS1B01G151800.3	Wheat	nucleus	48.43	65.35
TraesCS1D01G134100.2	Wheat	nucleus, plastid	61.38	61.64
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	41.34	53.51
TraesCS1A01G138300.1	Wheat	nucleus, plastid	58.25	53.14
OQU91386	Sorghum	nucleus	28.18	51.72
CDY62408	Canola	nucleus, plasma membrane, plastid	22.13	50.24
KRH64625	Soybean	plastid	49.9	49.38
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	51.15	49.0
KRH53279	Soybean	plastid	49.06	48.96
Bra032202.1-P	Field mustard	plastid	42.8	48.58
VIT_18s0001g02060.t01	Wine grape	plastid	49.27	47.68
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	49.9	47.61
AT1G44110.1	Thale cress	plastid	45.51	47.39
CDY25649	Canola	plastid	43.22	47.37
CDY65994	Canola	plastid	43.63	47.18
CDX85466	Canola	plastid	41.54	47.16
Bra023606.1-P	Field mustard	plastid	41.13	47.02
CDX87520	Canola	nucleus	37.79	46.89
CDY02719	Canola	plastid	41.96	46.85
Bra015671.1-P	Field mustard	plastid	37.58	46.63
Solyc11g005090.1.1	Tomato	plastid	47.18	46.12
CDX88368	Canola	plastid	36.53	46.05
KRH17986	Soybean	plastid	46.97	44.73
CDY41784	Canola	plastid	31.73	44.71
KRH16410	Soybean	plastid	45.93	43.65
PGSC0003DMT400015424	Potato	plastid	43.01	43.64
CDX92090	Canola	mitochondrion, nucleus	32.36	43.42
Bra022173.1-P	Field mustard	nucleus, plastid	34.03	43.24
AT1G77390.1	Thale cress	plastid	39.25	42.53
KXG24389	Sorghum	nucleus	18.37	34.92
EES16237	Sorghum	nucleus, plastid	30.9	34.58
OQU77084	Sorghum	nucleus	33.61	32.99
EER95303	Sorghum	nucleus, plastid	25.89	32.55
KXG23504	Sorghum	mitochondrion, nucleus	31.52	31.26
KXG20945	Sorghum	nucleus	24.22	27.36
EES03772	Sorghum	nucleus, plastid	25.26	26.95
EES12664	Sorghum	nucleus	24.01	26.62
EES18429	Sorghum	mitochondrion	22.76	23.7
EES02793	Sorghum	nucleus	22.34	23.11

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	UniProt:A0A1B6P7G0	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlants:KXG21616
ProteinID:KXG21616	ProteinID:KXG21616.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3009G087100	SUPFAM:SSF47954
UniParc:UPI00081AE549	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:14820590..14824647

Molecular Weight (calculated)

53621.1 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.195

Length

479 amino acids

Sequence
(BLAST)

001: MSCWAAGRRS SASAMAENAG ARGAKEAVAR SGKRVALGNL TNVFRGSWKS GAANSASDAK LSSTKPVDVK KGSFACLHNV NTERGSSRRL ASDQFDQAVS
101: VLQKNTSLPS VPDVVSTGCS SPGLSQDCSV SMDDAISICN STESSDLQCL NDDDPSMVAS LHWWASDRLH FSDSMDVAEL NWRKHSTIPL KADNIIDLDC
201: NYKDPRLSTT LACEIYESLR EAETRKMPST NFLETTQTDM SKTMRAMLID WLVEVTEEYR LVPETLYLTV NYIDRYLSVK EISRHRLQLV GVACLLIAAK
301: YEEICPLQVE ELCYVTDYSY TKEEVLQMEA SVLNDLKFEM TVPTAKCFLR RFVHAAQVLD KGSSLHLEFL ANYICELSLL DYSLLCYLPS LVAASAVFLA
401: KYILMPIKNP WNSTLSYYTR YTPSELRGCV RLLHRLFRLG PGSNLPAIRE KYSQHKYKFV AKKYCPPSIP TKFFQDLTS

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.