Factsheet for Bra032202.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005931.1-P
Bra006242.1-P
Bra009273.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	Bra005931.1-P	AT5G07300.1	20706207
AT1G44110.1	Bra009273.1-P	AT5G07300.1	20706207
AT1G44110.1	Bra006242.1-P	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65994	Canola	plastid	100.0	95.26
Bra023606.1-P	Field mustard	plastid	77.73	78.28
AT1G44110.1	Thale cress	plastid	80.57	73.91
Os05t0237100-01	Rice	extracellular	29.15	62.44
KRH64625	Soybean	plastid	63.03	54.96
KRH53279	Soybean	plastid	61.85	54.38
TraesCS1B01G151800.3	Wheat	nucleus	45.73	54.37
Zm00001d032128_P001	Maize	cytosol	19.91	53.16
VIT_18s0001g02060.t01	Wine grape	plastid	62.09	52.93
Bra015671.1-P	Field mustard	plastid	48.1	52.59
Os12t0298950-00	Rice	nucleus	54.5	51.45
Solyc11g005090.1.1	Tomato	plastid	59.0	50.82
PGSC0003DMT400015424	Potato	plastid	56.16	50.21
KRH17986	Soybean	plastid	59.24	49.7
Os01t0233100-00	Rice	nucleus, plastid	57.58	49.49
KRH16410	Soybean	plastid	58.06	48.61
Os01t0233500-01	Rice	nucleus, plastid	57.11	47.44
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	55.92	47.2
Bra022173.1-P	Field mustard	nucleus, plastid	41.94	46.95
TraesCS3B01G183400.1	Wheat	plastid	56.64	46.86
TraesCS3D01G164600.1	Wheat	plastid	56.4	46.67
TraesCS3A01G157000.1	Wheat	plastid	56.64	46.59
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	55.21	46.41
Zm00001d040381_P001	Maize	plastid	57.82	45.78
TraesCS1D01G134100.2	Wheat	nucleus, plastid	50.71	44.86
KXG21616	Sorghum	nucleus, plastid	48.58	42.8
Zm00001d009011_P001	Maize	nucleus, plastid	50.47	41.76
Bra000822.1-P	Field mustard	nucleus	37.2	41.64
Bra031463.1-P	Field mustard	nucleus	36.26	41.46
Bra033658.1-P	Field mustard	nucleus	34.36	40.73
Bra032220.1-P	Field mustard	nucleus	33.89	40.06
Bra040792.1-P	Field mustard	nucleus, plastid	34.36	39.84
Zm00001d021353_P002	Maize	mitochondrion, nucleus	18.72	39.5
Bra040753.1-P	Field mustard	nucleus, plastid	33.89	39.39
Bra040793.1-P	Field mustard	nucleus	33.89	39.39
Bra040710.1-P	Field mustard	nucleus	34.12	38.81
Bra026756.1-P	Field mustard	plastid	37.44	38.63
TraesCS1A01G138300.1	Wheat	nucleus, plastid	47.87	38.48
Bra016654.1-P	Field mustard	nucleus, plastid	38.86	36.85
Bra008973.1-P	Field mustard	nucleus, plastid	37.68	36.38
Bra003563.1-P	Field mustard	plastid	36.73	35.88
Bra008477.1-P	Field mustard	plastid	38.63	35.67
Bra035186.1-P	Field mustard	plastid	37.91	34.63
Zm00001d010404_P001	Maize	nucleus	39.34	34.23
Bra026120.1-P	Field mustard	nucleus	36.49	33.05
Bra016460.1-P	Field mustard	nucleus	29.38	30.24
Bra002046.1-P	Field mustard	nucleus	27.96	30.03
Bra025831.1-P	Field mustard	nucleus	29.15	30.0
Bra003727.1-P	Field mustard	nucleus	27.01	29.77
Bra017726.1-P	Field mustard	nucleus	27.73	28.82
Bra011769.1-P	Field mustard	nucleus	28.67	28.27
Bra015762.1-P	Field mustard	nucleus	28.44	27.84
Bra005880.1-P	Field mustard	nucleus, plastid	27.25	27.78
Bra024504.1-P	Field mustard	nucleus	27.49	27.68
Bra037265.1-P	Field mustard	nucleus	26.07	26.89
Bra028741.1-P	Field mustard	nucleus	26.3	26.75
Bra026065.1-P	Field mustard	nucleus	25.12	20.95
Bra016640.1-P	Field mustard	nucleus	24.17	15.57
Bra036544.1-P	Field mustard	nucleus	36.02	15.4

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra032202	EnsemblPlants:Bra032202.1	EnsemblPlants:Bra032202.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4ETS0	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002547E7F
SEG:seg	:	:	:	:	:

Description

AT1G44110 (E=5e-175) CYCA1;1 | CYCA1;1 (Cyclin A1;1); cyclin-dependent protein kinase regulator

Coordinates

chrA05:+:12957095..12959643

Molecular Weight (calculated)

47859.0 Da

IEP (calculated)

5.721

GRAVY (calculated)

-0.324

Length

422 amino acids

Sequence
(BLAST)

001: MAKKRAPLGN ITNQKKESQI PNSSVDFAHC SNKSAKLKQA PTQPVCVNAT SLLCEQTQAS SSSKSDDESM SIDETKSTCD SYKSPGVEYI DSEDVSIERK
101: AFSNLYITPS SETTNVNYCR RYVLSEMENK DKFINIDNND ADPQLCPPFA CDIYNHLRAA EAKKRPAVDY METVQKDVNS SMRGILVDWL VEVSEEYRLV
201: PETLYLTVNY IDRYLSGNVI SRHKLQLLGV ACMMVAAKYE EICAPQVEEF CYITDNTYLK DEVLDMESAV LNYLKFEMSA PTAKCFLRRF FRAAHGVNEA
301: PCMQLECMAN YIAELSLLEY TMLSHSPSLV AASAIFLAMY ILDPTRRPWN STLQLYTQYG AMELRGCVKD LQRFCSNAHV STLPAVRDKY SQHKYKFVAK
401: KFCPSIIPPE FFNNSCIDQF SN

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.