Factsheet for Os01t0233500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0521300-01
Os04t0382100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	Os02t0521300-01	AT5G07300.1	20706207
AT1G44110.1	Os04t0382100-01	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0298950-00	Rice	nucleus	82.87	94.18
Os01t0233100-00	Rice	nucleus, plastid	89.37	92.46
TraesCS3B01G183400.1	Wheat	plastid	81.69	81.37
TraesCS3D01G164600.1	Wheat	plastid	81.69	81.37
TraesCS3A01G157000.1	Wheat	plastid	81.89	81.09
Zm00001d032128_P001	Maize	cytosol	24.02	77.22
Zm00001d040381_P001	Maize	plastid	77.76	74.11
Os05t0237100-01	Rice	extracellular	28.54	73.6
Zm00001d009011_P001	Maize	nucleus, plastid	70.87	70.59
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	65.35	66.14
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	64.96	66.0
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	45.67	62.7
KRH64625	Soybean	plastid	55.91	58.68
KRH53279	Soybean	plastid	55.31	58.54
Zm00001d021353_P002	Maize	mitochondrion, nucleus	23.03	58.5
VIT_18s0001g02060.t01	Wine grape	plastid	56.5	57.98
AT1G44110.1	Thale cress	plastid	52.17	57.61
Bra032202.1-P	Field mustard	plastid	47.44	57.11
CDY25649	Canola	plastid	48.82	56.75
PGSC0003DMT400015424	Potato	plastid	52.17	56.14
Solyc11g005090.1.1	Tomato	plastid	53.74	55.71
CDY65994	Canola	plastid	48.43	55.53
Bra023606.1-P	Field mustard	plastid	45.28	54.89
CDX85466	Canola	plastid	45.28	54.5
CDY02719	Canola	plastid	45.87	54.31
CDY62408	Canola	nucleus, plasma membrane, plastid	22.05	53.08
KRH17986	Soybean	plastid	52.17	52.68
KRH16410	Soybean	plastid	51.38	51.79
CDX87520	Canola	nucleus	39.17	51.55
Bra015671.1-P	Field mustard	plastid	38.78	51.04
CDX88368	Canola	plastid	37.99	50.79
CDY41784	Canola	plastid	33.86	50.59
AT1G77390.1	Thale cress	plastid	41.73	47.96
CDX92090	Canola	mitochondrion, nucleus	32.48	46.22
Bra022173.1-P	Field mustard	nucleus, plastid	33.86	45.62
Os12t0581800-01	Rice	nucleus, plastid	34.06	44.94
Os12t0502300-01	Rice	nucleus, plastid	34.84	36.12
Os01t0281200-01	Rice	nucleus	23.43	28.13
Os06t0726800-01	Rice	nucleus	22.64	27.45
Os04t0563700-01	Rice	mitochondrion	21.85	26.43
Os03t0607600-00	Rice	nucleus	30.91	25.82
Os05t0493500-00	Rice	nucleus	24.02	25.05
Os03t0208700-00	Rice	nucleus	19.88	24.69
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	18.9	24.24
Os03t0208800-00	Rice	nucleus	11.42	14.61

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EntrezGene:4324288	EMBL:AB024986	ProteinID:BAA96590.1	ProteinID:BAF04426.1
ProteinID:BAS71197.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0051301	EnsemblPlantsGene:Os01g0233500	EnsemblPlants:Os01t0233500-01	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	UniProt:Q7F830	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI00000A3E14	RefSeq:XP_015630726.1	SEG:seg	:	:

Description

CYCLIN-A1-1Cyclin. (Os01t0233500-01)

Coordinates

chr1:-:7389373..7393708

Molecular Weight (calculated)

55038.3 Da

IEP (calculated)

6.911

GRAVY (calculated)

-0.234

Length

508 amino acids

Sequence
(BLAST)

001: MSSNLAASRR SSSSSSVAAA AAAKRPAVGE GGGGGGGKAA AGAAAAKKRV ALSNISNVAA GGGAPGKAGN AKLNLAASAA PVKKGSLASG RNVGTNRASA
101: VKSASAKPAP AISRHESATQ KESVLPPKVP SIVPTAALAP VTVPCSSFVS PMHSGDSVSV DETMSTCDSM KSPEFEYIDN GDSSSVLGSL QRRANENLRI
201: SEDRDVEETK WKKDAPSPME IDQICDVDNN YEDPQLCATL ASDIYMHLRE AETRKRPSTD FMETIQKDVN PSMRAILIDW LVEVAEEYRL VPDTLYLTVN
301: YIDRYLSGNE INRQRLQLLG VACMLIAAKY EEICAPQVEE FCYITDNTYF RDEVLEMEAS VLNYLKFEVT APTAKCFLRR FVRVAQVSDE DPALHLEFLA
401: NYVAELSLLE YNLLSYPPSL VAASAIFLAK FILQPTKHPW NSTLAHYTQY KSSELSDCVK ALHRLFSVGP GSNLPAIREK YTQHKYKFVA KKPCPPSIPT
501: EFFRDATC

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.